Literature DB >> 16008472

Electric-field-controlled water and ion permeation of a hydrophobic nanopore.

J Dzubiella1, J-P Hansen.   

Abstract

The permeation of hydrophobic, cylindrical nanopores by water molecules and ions is investigated under equilibrium and out-of-equilibrium conditions by extensive molecular-dynamics simulations. Neglecting the chemical structure of the confining pore surface, we focus on the effects of pore radius and electric field on permeation. The simulations confirm the intermittent filling of the pore by water, reported earlier under equilibrium conditions for pore radii larger than a critical radius R(c). Below this radius, water can still permeate the pore under the action of a strong electric field generated by an ion concentration imbalance at both ends of the pore embedded in a structureless membrane. The water driven into the channel undergoes considerable electrostriction characterized by a mean density up to twice the bulk density and by a dramatic drop in dielectric permittivity which can be traced back to a considerable distortion of the hydrogen-bond network inside the pore. The free-energy barrier to ion permeation is estimated by a variant of umbrella sampling for Na(+), K(+), Ca(2+), and Cl(-) ions, and correlates well with known solvation free energies in bulk water. Starting from an initial imbalance in ion concentration, equilibrium is gradually restored by successive ion passages through the water-filled pore. At each passage the electric field across the pore drops, reducing the initial electrostriction, until the pore, of radius less than R(c), closes to water and hence to ion transport, thus providing a possible mechanism for voltage-dependent gating of hydrophobic pores.

Entities:  

Year:  2005        PMID: 16008472     DOI: 10.1063/1.1927514

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  24 in total

1.  Electric-field-induced wetting and dewetting in single hydrophobic nanopores.

Authors:  Matthew R Powell; Leah Cleary; Matthew Davenport; Kenneth J Shea; Zuzanna S Siwy
Journal:  Nat Nanotechnol       Date:  2011-10-30       Impact factor: 39.213

2.  Nanopores: water flow at the flip of a switch.

Authors:  Ulrich Rant
Journal:  Nat Nanotechnol       Date:  2011-12-06       Impact factor: 39.213

3.  Ion leakage through transient water pores in protein-free lipid membranes driven by transmembrane ionic charge imbalance.

Authors:  Andrey A Gurtovenko; Ilpo Vattulainen
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

4.  AFM study on the electric-field effects on supported bilayer lipid membranes.

Authors:  Lars J C Jeuken
Journal:  Biophys J       Date:  2008-03-07       Impact factor: 4.033

5.  Bubbles, gating, and anesthetics in ion channels.

Authors:  Roland Roth; Dirk Gillespie; Wolfgang Nonner; Robert E Eisenberg
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

6.  Determinants of water permeability through nanoscopic hydrophilic channels.

Authors:  Guillem Portella; Bert L de Groot
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

Review 7.  Dewetting and hydrophobic interaction in physical and biological systems.

Authors:  Bruce J Berne; John D Weeks; Ruhong Zhou
Journal:  Annu Rev Phys Chem       Date:  2009       Impact factor: 12.703

8.  Establishing conditions for simulating hydrophobic solutes in electric fields by molecular dynamics: effects of the long-range van der Waals treatment on the apparent particle mobility.

Authors:  Zoran Miličević; Siewert J Marrink; Ana-Sunčana Smith; David M Smith
Journal:  J Mol Model       Date:  2014-08-08       Impact factor: 1.810

9.  A structural model for facultative anion channels in an oligomeric membrane protein: the yeast TRK (K(+)) system.

Authors:  Juan Pablo Pardo; Martin González-Andrade; Kenneth Allen; Teruo Kuroda; Clifford L Slayman; Alberto Rivetta
Journal:  Pflugers Arch       Date:  2015-06-24       Impact factor: 3.657

10.  Molecular dynamics studies on the influences of a gradient electric field on the water chain in a peptide nanotube.

Authors:  Hui Li; Jianfen F Fan; Rui Li; Yi Yu; Xiliang L Yan
Journal:  J Mol Model       Date:  2014-08-01       Impact factor: 1.810

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