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Literature DB >> 15998454

Conservation anchors in the vertebrate genome.

Abstract

Genomic segments that do not code for proteins yet show high conservation among vertebrates have recently been identified by various computational methodologies. We refer to them as ANCORs (ancestral non-coding conserved regions). The frequency of individual ANCORs within the genome, along with their (correlated) inter-species identity scores, helps in assessing the probability that they function in transcription regulation or RNA coding.

Entities: Disease Gene Species

Mesh：

Year: 2005 PMID： 15998454 PMCID： PMC1175977 DOI： 10.1186/gb-2005-6-7-115

Source DB: PubMed Journal: Genome Biol ISSN： 1474-7596 Impact factor: 13.583

39 in total

1. Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs.

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Journal: Genome Res Date: 1999-09 Impact factor: 9.043

2. Initial sequencing and analysis of the human genome.

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Journal: Nature Date: 2001-02-15 Impact factor: 49.962

3. S/MARt DB: a database on scaffold/matrix attached regions.

Authors: Ines Liebich; Jürgen Bode; Matthias Frisch; Edgar Wingender
Journal: Nucleic Acids Res Date: 2002-01-01 Impact factor: 16.971

4. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes.

Authors: Samuel Aparicio; Jarrod Chapman; Elia Stupka; Nik Putnam; Jer-Ming Chia; Paramvir Dehal; Alan Christoffels; Sam Rash; Shawn Hoon; Arian Smit; Maarten D Sollewijn Gelpke; Jared Roach; Tania Oh; Isaac Y Ho; Marie Wong; Chris Detter; Frans Verhoef; Paul Predki; Alice Tay; Susan Lucas; Paul Richardson; Sarah F Smith; Melody S Clark; Yvonne J K Edwards; Norman Doggett; Andrey Zharkikh; Sean V Tavtigian; Dmitry Pruss; Mary Barnstead; Cheryl Evans; Holly Baden; Justin Powell; Gustavo Glusman; Lee Rowen; Leroy Hood; Y H Tan; Greg Elgar; Trevor Hawkins; Byrappa Venkatesh; Daniel Rokhsar; Sydney Brenner
Journal: Science Date: 2002-07-25 Impact factor: 47.728

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Journal: Trends Genet Date: 2001-07 Impact factor: 11.639

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Review 7. Identification and analysis of cis-regulatory elements in development using comparative genomics with the pufferfish, Fugu rubripes.

Authors: Greg Elgar
Journal: Semin Cell Dev Biol Date: 2004-12 Impact factor: 7.727

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Authors: S Levy; S Hannenhalli; C Workman
Journal: Bioinformatics Date: 2001-10 Impact factor: 6.937

9. Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA.

Authors: B F Koop; L Hood
Journal: Nat Genet Date: 1994-05 Impact factor: 38.330

10. Highly conserved non-coding sequences are associated with vertebrate development.

Authors: Adam Woolfe; Martin Goodson; Debbie K Goode; Phil Snell; Gayle K McEwen; Tanya Vavouri; Sarah F Smith; Phil North; Heather Callaway; Krys Kelly; Klaudia Walter; Irina Abnizova; Walter Gilks; Yvonne J K Edwards; Julie E Cooke; Greg Elgar
Journal: PLoS Biol Date: 2004-11-11 Impact factor: 8.029

2 in total

1. A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L.

Authors: Rafaella Franch; Bruno Louro; Matina Tsalavouta; Dimitris Chatziplis; Costas S Tsigenopoulos; Elena Sarropoulou; Jenny Antonello; Andonis Magoulas; Constantinos C Mylonas; Massimiliano Babbucci; Tomaso Patarnello; Deborah M Power; Giorgos Kotoulas; Luca Bargelloni
Journal: Genetics Date: 2006-09-01 Impact factor: 4.562

2. Ancient genomic architecture for mammalian olfactory receptor clusters.

Authors: Ronny Aloni; Tsviya Olender; Doron Lancet
Journal: Genome Biol Date: 2006-10-01 Impact factor: 13.583

2 in total