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Literature DB >> 11752340

S/MARt DB: a database on scaffold/matrix attached regions.

Ines Liebich¹, Jürgen Bode, Matthias Frisch, Edgar Wingender.

Abstract

S/MARt DB, the S/MAR transaction database, is a relational database covering scaffold/matrix attached regions (S/MARs) and nuclear matrix proteins that are involved in the chromosomal attachment to the nuclear scaffold. The data are mainly extracted from original publications, but a World Wide Web interface for direct submissions is also available. S/MARt DB is closely linked to the TRANSFAC database on transcription factors and their binding sites. It is freely accessible through the World Wide Web (http://transfac.gbf.de/SMARtDB/) for non-profit research.

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Year: 2002 PMID： 11752340 PMCID： PMC99064 DOI： 10.1093/nar/30.1.372

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

16 in total

1. The TRANSFAC system on gene expression regulation.

Authors: E Wingender; X Chen; E Fricke; R Geffers; R Hehl; I Liebich; M Krull; V Matys; H Michael; R Ohnhäuser; M Prüss; F Schacherer; S Thiele; S Urbach
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

2. Protein Information Resource: a community resource for expert annotation of protein data.

Authors: W C Barker; J S Garavelli; Z Hou; H Huang; R S Ledley; P B McGarvey; H W Mewes; B C Orcutt; F Pfeiffer; A Tsugita; C R Vinayaka; C Xiao; L S Yeh; C Wu
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

3. The EMBL nucleotide sequence database.

Authors: G Stoesser; W Baker; A van den Broek; E Camon; M Garcia-Pastor; C Kanz; T Kulikova; V Lombard; R Lopez; H Parkinson; N Redaschi; P Sterk; P Stoehr; M A Tuli
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

4. Genetic testing for male infertility: a postulated role for mutations in sperm nuclear matrix attachment regions.

Authors: J A Kramer; S Zhang; Y Yaron; Y Zhao; S A Krawetz
Journal: Genet Test Date: 1997

5. Mitotic stability of an episomal vector containing a human scaffold/matrix-attached region is provided by association with nuclear matrix.

Authors: A Baiker; C Maercker; C Piechaczek; S B Schmidt; J Bode; C Benham; H J Lipps
Journal: Nat Cell Biol Date: 2000-03 Impact factor: 28.824

6. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors: A Bairoch; R Apweiler
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

7. Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold.

Authors: J Mirkovitch; M E Mirault; U K Laemmli
Journal: Cell Date: 1984-11 Impact factor: 41.582

8. Identification of a nuclear protein matrix.

Authors: R Berezney; D S Coffey
Journal: Biochem Biophys Res Commun Date: 1974-10-23 Impact factor: 3.575

Review 9. The nuclear matrix as a target for viral and cellular oncogenes.

Authors: W Deppert
Journal: Crit Rev Eukaryot Gene Expr Date: 2000 Impact factor: 1.807

10. Database resources of the National Center for Biotechnology Information.

Authors: D L Wheeler; D M Church; A E Lash; D D Leipe; T L Madden; J U Pontius; G D Schuler; L M Schriml; T A Tatusova; L Wagner; B A Rapp
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

23 in total

1. In silico prediction of scaffold/matrix attachment regions in large genomic sequences.

Authors: Matthias Frisch; Kornelie Frech; Andreas Klingenhoff; Kerstin Cartharius; Ines Liebich; Thomas Werner
Journal: Genome Res Date: 2002-02 Impact factor: 9.043

2. TRANSPATH: an integrated database on signal transduction and a tool for array analysis.

Authors: Mathias Krull; Nico Voss; Claudia Choi; Susanne Pistor; Anatolij Potapov; Edgar Wingender
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

3. Evaluation of sequence motifs found in scaffold/matrix-attached regions (S/MARs).

Authors: I Liebich; J Bode; I Reuter; E Wingender
Journal: Nucleic Acids Res Date: 2002-08-01 Impact factor: 16.971

4. Functional analysis of BnMAR element in transgenic tobacco plants.

Authors: Miao-Yun Xu; Xi Zhang; Lan Zhang; Yan-Zhong Luo; Yun-Liu Fan; Lei Wang
Journal: Mol Biol Rep Date: 2010-11-20 Impact factor: 2.316

5. Evolution of transcriptional enhancers in the immunoglobulin heavy-chain gene: functional characteristics of the zebrafish Emu3' enhancer.

Authors: Kristofor K Ellestad; Brad G Magor
Journal: Immunogenetics Date: 2005-03-09 Impact factor: 2.846

Review 6. Databases, models, and algorithms for functional genomics: a bioinformatics perspective.

Authors: Gautam B Singh; Harkirat Singh
Journal: Mol Biotechnol Date: 2005-02 Impact factor: 2.695

7. Integrative content-driven concepts for bioinformatics "beyond the cell".

Authors: Edgar Wingender; Torsten Crass; Jennifer D Hogan; Alexander E Kel; Olga V Kel-Margoulis; Anatolij P Potapov
Journal: J Biosci Date: 2007-01 Impact factor: 1.826

8. Functional characterization of a tobacco matrix attachment region-mediated enhancement of transgene expression.

Authors: Jiedao Zhang; Longtao Lu; Lusha Ji; Guodong Yang; Chengchao Zheng
Journal: Transgenic Res Date: 2008-11-30 Impact factor: 2.788

9. Conservation anchors in the vertebrate genome.

Authors: Ronny Aloni; Doron Lancet
Journal: Genome Biol Date: 2005-06-29 Impact factor: 13.583

10. Chromosome 12p deletions in TEL-AML1 childhood acute lymphoblastic leukemia are associated with retrotransposon elements and occur postnatally.

Authors: Joseph L Wiemels; Jerry Hofmann; Michelle Kang; Rebecca Selzer; Roland Green; Mi Zhou; Sheng Zhong; Luoping Zhang; Martyn T Smith; Carmen Marsit; Mignon Loh; Patricia Buffler; Ru-Fang Yeh
Journal: Cancer Res Date: 2008-12-01 Impact factor: 12.701