Literature DB >> 15988008

Sum1p, the origin recognition complex, and the spreading of a promoter-specific repressor in Saccharomyces cerevisiae.

Patrick J Lynch1, Hunter B Fraser, Elena Sevastopoulos, Jasper Rine, Laura N Rusche.   

Abstract

In Saccharomyces cerevisiae, Sum1p is a promoter-specific repressor. A single amino acid change generates the mutant Sum1-1p, which causes regional silencing at new loci where wild-type Sum1p does not act. Thus, Sum1-1p is a model for understanding how the spreading of repressive chromatin is regulated. When wild-type Sum1p was targeted to a locus where mutant Sum1-1p spreads, wild-type Sum1p did not spread as efficiently as mutant Sum1-1p did, despite being in the same genomic context. Thus, the SUM1-1 mutation altered the ability of the protein to spread. The spreading of Sum1-1p required both an enzymatically active deacetylase, Hst1p, and the N-terminal tail of histone H4, consistent with the spreading of Sum1-1p involving sequential modification of and binding to histone tails, as observed for other silencing proteins. Furthermore, deletion of the N-terminal tail of H4 caused Sum1-1p to return to loci where wild-type Sum1p acts, consistent with the SUM1-1 mutation increasing the affinity of the protein for H4 tails. These results imply that the spreading of repressive chromatin proteins is regulated by their affinities for histone tails. Finally, this study uncovered a functional connection between wild-type Sum1p and the origin recognition complex, and this relationship also contributes to mutant Sum1-1p localization.

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Year:  2005        PMID: 15988008      PMCID: PMC1168811          DOI: 10.1128/MCB.25.14.5920-5932.2005

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  49 in total

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4.  Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3.

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5.  Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

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Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

6.  Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Saccharomyces cerevisiae.

Authors:  J Xie; M Pierce; V Gailus-Durner; M Wagner; E Winter; A K Vershon
Journal:  EMBO J       Date:  1999-11-15       Impact factor: 11.598

7.  Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin.

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8.  Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation.

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Journal:  Mol Cell Biol       Date:  2002-06       Impact factor: 4.272

9.  Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast.

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10.  Transcriptional regulatory networks in Saccharomyces cerevisiae.

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Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

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  19 in total

1.  Swapping the gene-specific and regional silencing specificities of the Hst1 and Sir2 histone deacetylases.

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2.  A silencer promotes the assembly of silenced chromatin independently of recruitment.

Authors:  Patrick J Lynch; Laura N Rusche
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3.  An auxiliary silencer and a boundary element maintain high levels of silencing proteins at HMR in Saccharomyces cerevisiae.

Authors:  Patrick J Lynch; Laura N Rusche
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4.  Modeling of chromosomal epigenetic silencing processes.

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Journal:  Transcription       Date:  2011-07

5.  The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin.

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Journal:  Genes Dev       Date:  2010-07-01       Impact factor: 11.361

Review 6.  The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae.

Authors:  Marc R Gartenberg; Jeffrey S Smith
Journal:  Genetics       Date:  2016-08       Impact factor: 4.562

7.  Analyses of SUM1-1-mediated long-range repression.

Authors:  Lourdes Valenzuela; Sunil Gangadharan; Rohinton T Kamakaka
Journal:  Genetics       Date:  2005-11-04       Impact factor: 4.562

Review 8.  The Sum1/Ndt80 transcriptional switch and commitment to meiosis in Saccharomyces cerevisiae.

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Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

9.  Determinants of Sir2-Mediated, Silent Chromatin Cohesion.

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10.  The Sir2-Sum1 complex represses transcription using both promoter-specific and long-range mechanisms to regulate cell identity and sexual cycle in the yeast Kluyveromyces lactis.

Authors:  Meleah A Hickman; Laura N Rusche
Journal:  PLoS Genet       Date:  2009-11-06       Impact factor: 5.917

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