Literature DB >> 12168750

Comparative mycobacterial genomics as a tool for drug target and antigen discovery.

S T Cole1.   

Abstract

Genomics and the associated downstream technologies are generating vast data sets that provide new opportunities for understanding and combating both infectious and genetic diseases in humans. The genomic approach has been applied to tuberculosis, a major cause of transmissible morbidity and mortality, with notable success. Complete genome sequences are now available for three members of the Mycobacterium tuberculosis complex and the related intracellular pathogen M. leprae. Many of the predictions generated in silico by genomics have been validated through functional analysis, including studies of the transcriptome and proteome, and led to the identification of essential genes. Knowledge of the latter defines potential targets for new and existing drugs and their specificity can be assessed by comparative genomics with the host or other pathogens. Genomics is also furthering tuberculosis vaccine development by pinpointing potentially antigenic proteins as well as providing better diagnostic tools to detect infection.

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Year:  2002        PMID: 12168750     DOI: 10.1183/09031936.02.00400202

Source DB:  PubMed          Journal:  Eur Respir J Suppl        ISSN: 0904-1850


  24 in total

Review 1.  Expression library immunization: a road map for discovery of vaccines against infectious diseases.

Authors:  Adel M Talaat; Katherine Stemke-Hale
Journal:  Infect Immun       Date:  2005-11       Impact factor: 3.441

2.  Rv0216, a conserved hypothetical protein from Mycobacterium tuberculosis that is essential for bacterial survival during infection, has a double hotdog fold.

Authors:  Alina Castell; Patrik Johansson; Torsten Unge; T Alwyn Jones; Kristina Bäckbro
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725

3.  Predicting essential genes in fungal genomes.

Authors:  Michael Seringhaus; Alberto Paccanaro; Anthony Borneman; Michael Snyder; Mark Gerstein
Journal:  Genome Res       Date:  2006-08-09       Impact factor: 9.043

4.  Structure of Mycobacterium tuberculosis Rv2714, a representative of a duplicated gene family in Actinobacteria.

Authors:  Martin Graña; Marco Bellinzoni; Isabelle Miras; Cedric Fiez-Vandal; Ahmed Haouz; William Shepard; Alejandro Buschiazzo; Pedro M Alzari
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-09-18

5.  Mycobacterium tuberculosis pellicles express unique proteins recognized by the host humoral response.

Authors:  Patrick W Kerns; David F Ackhart; Randall J Basaraba; Jeff G Leid; Mark E Shirtliff
Journal:  Pathog Dis       Date:  2014-02-26       Impact factor: 3.166

6.  The crystal structure of Rv0813c from Mycobacterium tuberculosis reveals a new family of fatty acid-binding protein-like proteins in bacteria.

Authors:  William Shepard; Ahmed Haouz; Martin Graña; Alejandro Buschiazzo; Jean-Michel Betton; Stewart T Cole; Pedro M Alzari
Journal:  J Bacteriol       Date:  2006-12-15       Impact factor: 3.490

Review 7.  Comprehensive evaluation of solution nuclear magnetic resonance spectroscopy sample preparation for helical integral membrane proteins.

Authors:  Richard C Page; Jacob D Moore; Hau B Nguyen; Mukesh Sharma; Rose Chase; Fei Philip Gao; Charles K Mobley; Charles R Sanders; Liping Ma; Frank D Sönnichsen; Sangwon Lee; Stanley C Howell; Stanley J Opella; Timothy A Cross
Journal:  J Struct Funct Genomics       Date:  2006-07-19

8.  Inactivation of Rv2525c, a substrate of the twin arginine translocation (Tat) system of Mycobacterium tuberculosis, increases beta-lactam susceptibility and virulence.

Authors:  Brigitte Saint-Joanis; Caroline Demangel; Mary Jackson; Priscille Brodin; Laurent Marsollier; Helena Boshoff; Stewart T Cole
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

9.  Characterization of Mycobacterium leprae RecA intein, a LAGLIDADG homing endonuclease, reveals a unique mode of DNA binding, helical distortion, and cleavage compared with a canonical LAGLIDADG homing endonuclease.

Authors:  Pawan Singh; Pankaj Tripathi; George H Silva; Alfred Pingoud; K Muniyappa
Journal:  J Biol Chem       Date:  2009-07-15       Impact factor: 5.157

10.  Screening of highly expressed mycobacterial genes identifies Rv3615c as a useful differential diagnostic antigen for the Mycobacterium tuberculosis complex.

Authors:  Ben Sidders; Chris Pirson; Philip J Hogarth; R Glyn Hewinson; Neil G Stoker; H Martin Vordermeier; Katie Ewer
Journal:  Infect Immun       Date:  2008-06-02       Impact factor: 3.441

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