Literature DB >> 15980182

Light-scattering studies of protein solutions: role of hydration in weak protein-protein interactions.

A Paliwal1, D Asthagiri, D Abras, A M Lenhoff, M E Paulaitis.   

Abstract

We model the hydration contribution to short-range electrostatic/dispersion protein interactions embodied in the osmotic second virial coefficient, B(2), by adopting a quasi-chemical description in which water molecules associated with the protein are identified through explicit molecular dynamics simulations. These water molecules reduce the surface complementarity of highly favorable short-range interactions, and therefore can play an important role in mediating protein-protein interactions. Here we examine this quasi-chemical view of hydration by predicting the interaction part of B(2) and comparing our results with those derived from light-scattering measurements of B(2) for staphylococcal nuclease, lysozyme, and chymotrypsinogen at 25 degrees C as a function of solution pH and ionic strength. We find that short-range protein interactions are influenced by water molecules strongly associated with a relatively small fraction of the protein surface. However, the effect of these strongly associated water molecules on the surface complementarity of short-range protein interactions is significant, and must be taken into account for an accurate description of B(2). We also observe remarkably similar hydration behavior for these proteins despite substantial differences in their three-dimensional structures and spatial charge distributions, suggesting a general characterization of protein hydration.

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Year:  2005        PMID: 15980182      PMCID: PMC1366661          DOI: 10.1529/biophysj.105.065284

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  27 in total

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Journal:  Phys Rev Lett       Date:  1996-01-01       Impact factor: 9.161

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

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Authors:  Richard H Henchman; J Andrew McCammon
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Authors:  D N Petsev; P G Vekilov
Journal:  Phys Rev Lett       Date:  2000-02-07       Impact factor: 9.161

Review 5.  Solvation and hydration of proteins and nucleic acids: a theoretical view of simulation and experiment.

Authors:  Vladimir Makarov; B Montgomery Pettitt; Michael Feig
Journal:  Acc Chem Res       Date:  2002-06       Impact factor: 22.384

6.  A consistent experimental and modeling approach to light-scattering studies of protein-protein interactions in solution.

Authors:  D Asthagiri; A Paliwal; D Abras; A M Lenhoff; M E Paulaitis
Journal:  Biophys J       Date:  2005-03-25       Impact factor: 4.033

7.  Molecular origins of osmotic second virial coefficients of proteins.

Authors:  B L Neal; D Asthagiri; A M Lenhoff
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

8.  Canonical dynamics: Equilibrium phase-space distributions.

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Journal:  Phys Rev A Gen Phys       Date:  1985-03

9.  Solution structures of staphylococcal nuclease from multidimensional, multinuclear NMR: nuclease-H124L and its ternary complex with Ca2+ and thymidine-3',5'-bisphosphate.

Authors:  J Wang; D M Truckses; F Abildgaard; Z Dzakula; Z Zolnai; J L Markley
Journal:  J Biomol NMR       Date:  1997-09       Impact factor: 2.835

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  15 in total

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Journal:  J Mol Biol       Date:  2007-11-28       Impact factor: 5.469

2.  Protein-protein interaction on lysozyme crystallization revealed by rotational diffusion analysis.

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Journal:  Biophys J       Date:  2008-02-29       Impact factor: 4.033

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Journal:  Biophys J       Date:  2008-05-30       Impact factor: 4.033

5.  Polymorphic Protein Crystal Growth: Influence of Hydration and Ions in Glucose Isomerase.

Authors:  C M Gillespie; D Asthagiri; A M Lenhoff
Journal:  Cryst Growth Des       Date:  2014-01-02       Impact factor: 4.076

6.  Viscosity analysis of high concentration bovine serum albumin aqueous solutions.

Authors:  Sandeep Yadav; Steven J Shire; Devendra S Kalonia
Journal:  Pharm Res       Date:  2011-04-14       Impact factor: 4.200

7.  Separating instability from aggregation propensity in γS-crystallin variants.

Authors:  William D Brubaker; J Alfredo Freites; Kory J Golchert; Rebecca A Shapiro; Vasilios Morikis; Douglas J Tobias; Rachel W Martin
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

8.  In Silico Prediction of Diffusion Interaction Parameter (kD), a Key Indicator of Antibody Solution Behaviors.

Authors:  Dheeraj S Tomar; Satish K Singh; Li Li; Matthew P Broulidakis; Sandeep Kumar
Journal:  Pharm Res       Date:  2018-08-20       Impact factor: 4.200

9.  Coarse-grained model for colloidal protein interactions, B(22), and protein cluster formation.

Authors:  Marco A Blanco; Erinc Sahin; Anne S Robinson; Christopher J Roberts
Journal:  J Phys Chem B       Date:  2013-12-10       Impact factor: 2.991

10.  Effects of surface water on protein dynamics studied by a novel coarse-grained normal mode approach.

Authors:  Lei Zhou; Steven A Siegelbaum
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

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