Literature DB >> 15969647

Xylella and Xanthomonas Mobil'omics.

Claudia B Monteiro-Vitorello1, Mariana C de Oliveira, Marcelo M Zerillo, Alessandro M Varani, Edwin Civerolo, Marie-Anne Van Sluys.   

Abstract

The gamma-proteobacterium Xanthomonadales groups two closely related genera of plant pathogens, Xanthomonas and Xylella. Whole genome sequencing and comparative analyses disclosed a high degree of identity and co-linearity of the chromosome backbone between species and strains. Differences observed are usually clustered into genomic islands, most of which are delimited by genetic mobile elements. Focus is given in this paper to describe which groups of mobile elements are found and what is the relative contribution of these elements to Xanthomonas and Xylella genomes. Insertion sequence (IS) elements have invaded the Xanthomonas genome several times, whereas Xylella is rich in phage-related regions. Also, different plasmids are found inhabiting the bacterial cells studied here. Altogether, these results suggest that the integrative elements such as phages and transposable elements as well as the episomal plasmids are important drivers of the genome evolution of this important group of plant pathogens.

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Year:  2005        PMID: 15969647     DOI: 10.1089/omi.2005.9.146

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  17 in total

1.  Characterization of ISXax1, a novel insertion sequence restricted to Xanthomonas axonopodis pv. phaseoli (variants fuscans and non-fuscans) and Xanthomonas axonopodis pv. vesicatoria.

Authors:  Seyed Mehdi Alavi; Stéphane Poussier; Charles Manceau
Journal:  Appl Environ Microbiol       Date:  2007-01-05       Impact factor: 4.792

2.  Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Authors:  Adam J Bogdanove; Ralf Koebnik; Hong Lu; Ayako Furutani; Samuel V Angiuoli; Prabhu B Patil; Marie-Anne Van Sluys; Robert P Ryan; Damien F Meyer; Sang-Wook Han; Gudlur Aparna; Misha Rajaram; Arthur L Delcher; Adam M Phillippy; Daniela Puiu; Michael C Schatz; Martin Shumway; Daniel D Sommer; Cole Trapnell; Faiza Benahmed; George Dimitrov; Ramana Madupu; Diana Radune; Steven Sullivan; Gopaljee Jha; Hiromichi Ishihara; Sang-Won Lee; Alok Pandey; Vikas Sharma; Malinee Sriariyanun; Boris Szurek; Casiana M Vera-Cruz; Karin S Dorman; Pamela C Ronald; Valérie Verdier; J Maxwell Dow; Ramesh V Sonti; Seiji Tsuge; Volker P Brendel; Pablo D Rabinowicz; Jan E Leach; Frank F White; Steven L Salzberg
Journal:  J Bacteriol       Date:  2011-07-22       Impact factor: 3.490

3.  Characterization of novel virulent broad-host-range phages of Xylella fastidiosa and Xanthomonas.

Authors:  Stephen J Ahern; Mayukh Das; Tushar Suvra Bhowmick; Ry Young; Carlos F Gonzalez
Journal:  J Bacteriol       Date:  2013-11-08       Impact factor: 3.490

4.  Distinguishing microbial genome fragments based on their composition: evolutionary and comparative genomic perspectives.

Authors:  Scott C Perry; Robert G Beiko
Journal:  Genome Biol Evol       Date:  2010-01-25       Impact factor: 3.416

5.  In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1.

Authors:  Mauricio Soto-Suárez; Diana Bernal; Carolina González; Boris Szurek; Romain Guyot; Joe Tohme; Valérie Verdier
Journal:  BMC Microbiol       Date:  2010-06-11       Impact factor: 3.605

6.  Genomic and biological analysis of phage Xfas53 and related prophages of Xylella fastidiosa.

Authors:  Elizabeth J Summer; Christopher J Enderle; Stephen J Ahern; Jason J Gill; Cruz P Torres; David N Appel; Mark C Black; Ry Young; Carlos F Gonzalez
Journal:  J Bacteriol       Date:  2010-01       Impact factor: 3.490

7.  Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18.

Authors:  Da-Qiang Wu; Jing Ye; Hong-Yu Ou; Xue Wei; Xianqing Huang; Ya-Wen He; Yuquan Xu
Journal:  BMC Genomics       Date:  2011-08-31       Impact factor: 3.969

8.  Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains.

Authors:  Alessandro M Varani; Claudia B Monteiro-Vitorello; Luiz G P de Almeida; Rangel C Souza; Oberdan L Cunha; Wanessa C Lima; Edwin Civerolo; Marie-Anne Van Sluys; Ana T R Vasconcelos
Journal:  Genet Mol Biol       Date:  2012-02-16       Impact factor: 1.771

9.  Genomes-based phylogeny of the genus Xanthomonas.

Authors:  Luis M Rodriguez-R; Alejandro Grajales; Mario L Arrieta-Ortiz; Camilo Salazar; Silvia Restrepo; Adriana Bernal
Journal:  BMC Microbiol       Date:  2012-03-23       Impact factor: 3.605

10.  Phylogenomics and molecular signatures for species from the plant pathogen-containing order xanthomonadales.

Authors:  Hafiz Sohail Naushad; Radhey S Gupta
Journal:  PLoS One       Date:  2013-02-08       Impact factor: 3.240

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