Literature DB >> 15957905

Peptide bond isosteres: ester or (E)-alkene in the backbone of the collagen triple helix.

Cara L Jenkins1, Melissa M Vasbinder, Scott J Miller, Ronald T Raines.   

Abstract

[structure: see text] Collagen is the most abundant protein in animals. Interstrand N-H...O=C hydrogen bonds between backbone amide groups form a ladder in the middle of the collagen triple helix. Isosteric replacement of the hydrogen-bond-donating amide with an ester or (E)-alkene markedly decreases the conformational stability of the triple helix. Thus, this recurring hydrogen bond is critical to the structural integrity of collagen. In this context, an ester isostere confers more stability than does an (E)-alkene.

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Year:  2005        PMID: 15957905     DOI: 10.1021/ol050780m

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  35 in total

1.  Peptide-Like Molecules (PLMs): A Journey from Peptide Bond Isosteres to Gramicidin S Mimetics and Mitochondrial Targeting Agents.

Authors:  Peter Wipf; Jingbo Xiao; Corey R J Stephenson
Journal:  Chimia (Aarau)       Date:  2009-11       Impact factor: 1.509

2.  Quasiracemic crystallization as a tool to assess the accommodation of noncanonical residues in nativelike protein conformations.

Authors:  David E Mortenson; Kenneth A Satyshur; Ilia A Guzei; Katrina T Forest; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2012-01-18       Impact factor: 15.419

3.  2005 Emil Thomas Kaiser Award.

Authors:  Ronald T Raines
Journal:  Protein Sci       Date:  2006-05       Impact factor: 6.725

Review 4.  An evaluation of peptide-bond isosteres.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Chembiochem       Date:  2011-07-12       Impact factor: 3.164

5.  Olefin metathesis in homogeneous aqueous media catalyzed by conventional ruthenium catalysts.

Authors:  Joseph B Binder; Jacqueline J Blank; Ronald T Raines
Journal:  Org Lett       Date:  2007-10-19       Impact factor: 6.005

6.  Stabilization of collagen-model, triple-helical peptides for in vitro and in vivo applications.

Authors:  Manishabrata Bhowmick; Gregg B Fields
Journal:  Methods Mol Biol       Date:  2013

7.  Stereoelectronic and steric effects in side chains preorganize a protein main chain.

Authors:  Matthew D Shoulders; Kenneth A Satyshur; Katrina T Forest; Ronald T Raines
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-31       Impact factor: 11.205

8.  Convenient synthesis of collagen-related tripeptides for segment condensation.

Authors:  Aubrey J Ellison; Brett VanVeller; Ronald T Raines
Journal:  Biopolymers       Date:  2015-11       Impact factor: 2.505

9.  Self-Assembled Collagen-like Peptide Fibers as Templates for Metallic Nanowires.

Authors:  Daniel Gottlieb; Stephen A Morin; Song Jin; Ronald T Raines
Journal:  J Mater Chem       Date:  2008-01-01

10.  Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins.

Authors:  Jianmin Gao; Daryl A Bosco; Evan T Powers; Jeffery W Kelly
Journal:  Nat Struct Mol Biol       Date:  2009-06-14       Impact factor: 15.369

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