Literature DB >> 20725595

Peptide-Like Molecules (PLMs): A Journey from Peptide Bond Isosteres to Gramicidin S Mimetics and Mitochondrial Targeting Agents.

Peter Wipf, Jingbo Xiao, Corey R J Stephenson.   

Abstract

Peptides are natural ligands and substrates for receptors and enzymes and exhibit broad physiological effects. However, their use as therapeutic agents often suffers from poor bioavailability and insufficient membrane permeability. The success of peptide mimicry hinges on the ability of bioisosteres, in particular peptide bond replacements, to adopt suitable secondary structures relevant to peptide strands and position functional groups in equivalent space. This perspective highlights past and ongoing studies in our group that involve new methods development as well as specific synthetic library preparations and applications in chemical biology, with the goal to enhance the use of alkene and cyclopropane peptide bond isosteres.

Entities:  

Year:  2009        PMID: 20725595      PMCID: PMC2922051          DOI: 10.2533/chimia.2009.764

Source DB:  PubMed          Journal:  Chimia (Aarau)        ISSN: 0009-4293            Impact factor:   1.509


  55 in total

1.  Methyl- and (Trifluoromethyl)alkene Peptide Isosteres: Synthesis and Evaluation of Their Potential as beta-Turn Promoters and Peptide Mimetics.

Authors:  Peter Wipf; Todd C. Henninger; Steven J. Geib
Journal:  J Org Chem       Date:  1998-09-04       Impact factor: 4.354

2.  Beta-turn modified gramicidin S analogues containing arylated sugar amino acids display antimicrobial and hemolytic activity comparable to the natural product.

Authors:  Gijsbert M Grotenbreg; Annelies E M Buizert; Antonio L Llamas-Saiz; Emile Spalburg; Peter A V van Hooft; Albert J de Neeling; Daan Noort; Mark J van Raaij; Gijsbert A van der Marel; Herman S Overkleeft; Mark Overhand
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

3.  Fmoc-based solid-phase synthesis of GPR54-agonistic pentapeptide derivatives containing alkene- and fluoroalkene-dipeptide isosteres.

Authors:  Kenji Tomita; Tetsuo Narumi; Ayumu Niida; Shinya Oishi; Hiroaki Ohno; Nobutaka Fujii
Journal:  Biopolymers       Date:  2007       Impact factor: 2.505

Review 4.  The world of beta- and gamma-peptides comprised of homologated proteinogenic amino acids and other components.

Authors:  Dieter Seebach; Albert K Beck; Daniel J Bierbaum
Journal:  Chem Biodivers       Date:  2004-08       Impact factor: 2.408

5.  Treatment with a novel hemigramicidin-TEMPO conjugate prolongs survival in a rat model of lethal hemorrhagic shock.

Authors:  Carlos A Macias; Jeffrey W Chiao; Jingbo Xiao; Devinder S Arora; Yulia Y Tyurina; Russell L Delude; Peter Wipf; Valerian E Kagan; Mitchell P Fink
Journal:  Ann Surg       Date:  2007-02       Impact factor: 12.969

6.  Electrostatic versus steric effects in peptidomimicry: synthesis and secondary structure analysis of gramicidin S analogues with (E)-alkene peptide isosteres.

Authors:  Jingbo Xiao; Bernard Weisblum; Peter Wipf
Journal:  J Am Chem Soc       Date:  2005-04-27       Impact factor: 15.419

Review 7.  SRC homology-2 inhibitors: peptidomimetic and nonpeptide.

Authors:  Tomi K Sawyer; Regine S Bohacek; David C Dalgarno; Charles J Eyermann; Noriyuki Kawahata; Chester A Metcalf; William C Shakespeare; Raji Sundaramoorthi; Yihan Wang; Michael G Yang
Journal:  Mini Rev Med Chem       Date:  2002-10       Impact factor: 3.862

8.  E-olefin dipeptide isostere incorporation into a polypeptide backbone enables hydrogen bond perturbation: probing the requirements for Alzheimer's amyloidogenesis.

Authors:  Yanwen Fu; Jan Bieschke; Jeffery W Kelly
Journal:  J Am Chem Soc       Date:  2005-11-09       Impact factor: 15.419

Review 9.  Targeting mitochondria.

Authors:  Adam T Hoye; Jennifer E Davoren; Peter Wipf; Mitchell P Fink; Valerian E Kagan
Journal:  Acc Chem Res       Date:  2008-01       Impact factor: 22.384

10.  Serine-cis-proline and serine-trans-proline isosteres: stereoselective synthesis of (Z)- and (E)-alkene mimics by Still-Wittig and Ireland-Claisen rearrangements.

Authors:  Xiaodong J Wang; Scott A Hart; Bailing Xu; Matthew D Mason; John R Goodell; Felicia A Etzkorn
Journal:  J Org Chem       Date:  2003-03-21       Impact factor: 4.354

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  9 in total

Review 1.  Designing antimicrobial peptides: form follows function.

Authors:  Christopher D Fjell; Jan A Hiss; Robert E W Hancock; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2011-12-16       Impact factor: 84.694

2.  Large-scale asymmetric synthesis of the bioprotective agent JP4-039 and analogs.

Authors:  Marie-Céline Frantz; Joshua G Pierce; Joan M Pierce; Li Kangying; Wan Qingwei; Matthew Johnson; Peter Wipf
Journal:  Org Lett       Date:  2011-03-31       Impact factor: 6.005

3.  Structural consequences of beta-amino acid preorganization in a self-assembling alpha/beta-peptide: fundamental studies of foldameric helix bundles.

Authors:  Joshua L Price; W Seth Horne; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2010-09-08       Impact factor: 15.419

4.  Allylic Amines as Key Building Blocks in the Synthesis of (E)-Alkene Peptide Isosteres.

Authors:  Erin M Skoda; Gary C Davis; Peter Wipf
Journal:  Org Process Res Dev       Date:  2012       Impact factor: 3.317

5.  Iterative structure-based peptide-like inhibitor design against the botulinum neurotoxin serotype A.

Authors:  Jorge E Zuniga; Jared T Hammill; Omri Drory; Jonathan E Nuss; James C Burnett; Rick Gussio; Peter Wipf; Sina Bavari; Axel T Brunger
Journal:  PLoS One       Date:  2010-06-30       Impact factor: 3.240

6.  Synthesis of analogs of the radiation mitigator JP4-039 and visualization of BODIPY derivatives in mitochondria.

Authors:  Marie-Céline Frantz; Erin M Skoda; Joshua R Sacher; Michael W Epperly; Julie P Goff; Joel S Greenberger; Peter Wipf
Journal:  Org Biomol Chem       Date:  2013-07-07       Impact factor: 3.876

7.  Small Molecule Inhibitors of the PCSK9·LDLR Interaction.

Authors:  Jaru Taechalertpaisarn; Bosheng Zhao; Xiaowen Liang; Kevin Burgess
Journal:  J Am Chem Soc       Date:  2018-02-26       Impact factor: 15.419

8.  Synthesis and Evaluation of a Mitochondria-Targeting Poly(ADP-ribose) Polymerase-1 Inhibitor.

Authors:  Tanja Krainz; Andrew M Lamade; Lina Du; Taber S Maskrey; Michael J Calderon; Simon C Watkins; Michael W Epperly; Joel S Greenberger; Hülya Bayır; Peter Wipf; Robert S B Clark
Journal:  ACS Chem Biol       Date:  2018-09-14       Impact factor: 5.100

9.  Stereoselective synthesis of Gly-Gly-type (E)-methylalkene and (Z)-chloroalkene dipeptide isosteres and their application to 14-mer RGG peptidomimetics.

Authors:  Hikari Okita; Yuna Kato; Tatsuki Masuzawa; Kosuke Arai; Sayuri Takeo; Kohei Sato; Nobuyuki Mase; Takanori Oyoshi; Tetsuo Narumi
Journal:  RSC Adv       Date:  2020-08-10       Impact factor: 3.361

  9 in total

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