Literature DB >> 15930008

The prokaryotic enzyme DsbB may share key structural features with eukaryotic disulfide bond forming oxidoreductases.

Carolyn S Sevier1, Hiroshi Kadokura, Vincent C Tam, Jon Beckwith, Deborah Fass, Chris A Kaiser.   

Abstract

Three different classes of thiol-oxidoreductases that facilitate the formation of protein disulfide bonds have been identified. They are the Ero1 and SOX/ALR family members in eukaryotic cells, and the DsbB family members in prokaryotic cells. These enzymes transfer oxidizing potential to the proteins PDI or DsbA, which are responsible for directly introducing disulfide bonds into substrate proteins during oxidative protein folding in eukaryotes and prokaryotes, respectively. A comparison of the recent X-ray crystal structure of Ero1 with the previously solved structure of the SOX/ALR family member Erv2 reveals that, despite a lack of primary sequence homology between Ero1 and Erv2, the core catalytic domains of these two proteins share a remarkable structural similarity. Our search of the DsbB protein sequence for features found in the Ero1 and Erv2 structures leads us to propose that, in a fascinating example of structural convergence, the catalytic core of this integral membrane protein may resemble the soluble catalytic domain of Ero1 and Erv2. Our analysis of DsbB also identified two new groups of DsbB proteins that, based on sequence homology, may also possess a catalytic core similar in structure to the catalytic domains of Ero1 and Erv2.

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Year:  2005        PMID: 15930008      PMCID: PMC2253379          DOI: 10.1110/ps.051355705

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  53 in total

1.  Application of multiple sequence alignment profiles to improve protein secondary structure prediction.

Authors:  J A Cuff; G J Barton
Journal:  Proteins       Date:  2000-08-15

2.  The PSIPRED protein structure prediction server.

Authors:  L J McGuffin; K Bryson; D T Jones
Journal:  Bioinformatics       Date:  2000-04       Impact factor: 6.937

3.  Cascaded multiple classifiers for secondary structure prediction.

Authors:  M Ouali; R D King
Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

4.  Biochemical basis of oxidative protein folding in the endoplasmic reticulum.

Authors:  B P Tu; S C Ho-Schleyer; K J Travers; J S Weissman
Journal:  Science       Date:  2000-11-24       Impact factor: 47.728

5.  Porter: a new, accurate server for protein secondary structure prediction.

Authors:  Gianluca Pollastri; Aoife McLysaght
Journal:  Bioinformatics       Date:  2004-12-07       Impact factor: 6.937

6.  Two pairs of conserved cysteines are required for the oxidative activity of Ero1p in protein disulfide bond formation in the endoplasmic reticulum.

Authors:  A R Frand; C A Kaiser
Journal:  Mol Biol Cell       Date:  2000-09       Impact factor: 4.138

7.  Erv1p from Saccharomyces cerevisiae is a FAD-linked sulfhydryl oxidase.

Authors:  J Lee; G Hofhaus; T Lisowsky
Journal:  FEBS Lett       Date:  2000-07-14       Impact factor: 4.124

8.  Disulfide bonds are generated by quinone reduction.

Authors:  M W Bader; T Xie; C A Yu; J C Bardwell
Journal:  J Biol Chem       Date:  2000-08-25       Impact factor: 5.157

9.  Roles of a conserved arginine residue of DsbB in linking protein disulfide-bond-formation pathway to the respiratory chain of Escherichia coli.

Authors:  H Kadokura; M Bader; H Tian; J C Bardwell; J Beckwith
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

10.  Two cysteines in each periplasmic domain of the membrane protein DsbB are required for its function in protein disulfide bond formation.

Authors:  G Jander; N L Martin; J Beckwith
Journal:  EMBO J       Date:  1994-11-01       Impact factor: 11.598

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  15 in total

1.  Bacterial species exhibit diversity in their mechanisms and capacity for protein disulfide bond formation.

Authors:  Rachel J Dutton; Dana Boyd; Mehmet Berkmen; Jon Beckwith
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-11       Impact factor: 11.205

Review 2.  Oxidative protein folding and the Quiescin-sulfhydryl oxidase family of flavoproteins.

Authors:  Vamsi K Kodali; Colin Thorpe
Journal:  Antioxid Redox Signal       Date:  2010-10       Impact factor: 8.401

3.  Crystal structures of human Ero1α reveal the mechanisms of regulated and targeted oxidation of PDI.

Authors:  Kenji Inaba; Shoji Masui; Hiroka Iida; Stefano Vavassori; Roberto Sitia; Mamoru Suzuki
Journal:  EMBO J       Date:  2010-09-10       Impact factor: 11.598

4.  Intramembrane Thiol Oxidoreductases: Evolutionary Convergence and Structural Controversy.

Authors:  Shuang Li; Guomin Shen; Weikai Li
Journal:  Biochemistry       Date:  2017-11-07       Impact factor: 3.162

5.  Critical role of a thiolate-quinone charge transfer complex and its adduct form in de novo disulfide bond generation by DsbB.

Authors:  Kenji Inaba; Yoh-hei Takahashi; Koreaki Ito; Shigehiko Hayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-29       Impact factor: 11.205

Review 6.  Disulfide bond formation in prokaryotes: history, diversity and design.

Authors:  Feras Hatahet; Dana Boyd; Jon Beckwith
Journal:  Biochim Biophys Acta       Date:  2014-02-25

7.  NMR solution structure of the integral membrane enzyme DsbB: functional insights into DsbB-catalyzed disulfide bond formation.

Authors:  Yunpeng Zhou; Tomasz Cierpicki; Ricardo H Flores Jimenez; Stephen M Lukasik; Jeffrey F Ellena; David S Cafiso; Hiroshi Kadokura; Jon Beckwith; John H Bushweller
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

8.  Identification of an atypical membrane protein involved in the formation of protein disulfide bonds in oxygenic photosynthetic organisms.

Authors:  Abhay K Singh; Maitrayee Bhattacharyya-Pakrasi; Himadri B Pakrasi
Journal:  J Biol Chem       Date:  2008-04-15       Impact factor: 5.157

Review 9.  Protein Disulfide Exchange by the Intramembrane Enzymes DsbB, DsbD, and CcdA.

Authors:  John H Bushweller
Journal:  J Mol Biol       Date:  2020-04-16       Impact factor: 5.469

10.  A new family of membrane electron transporters and its substrates, including a new cell envelope peroxiredoxin, reveal a broadened reductive capacity of the oxidative bacterial cell envelope.

Authors:  Seung-Hyun Cho; Derek Parsonage; Casey Thurston; Rachel J Dutton; Leslie B Poole; Jean-Francois Collet; Jon Beckwith
Journal:  MBio       Date:  2012-04-03       Impact factor: 7.867

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