Literature DB >> 16384917

Critical role of a thiolate-quinone charge transfer complex and its adduct form in de novo disulfide bond generation by DsbB.

Kenji Inaba1, Yoh-hei Takahashi, Koreaki Ito, Shigehiko Hayashi.   

Abstract

Recent studies have revealed numerous examples in which oxidation and reduction of cysteines in proteins are integrated into specific cascades of biological regulatory systems. In general, these reactions proceed as thiol-disulfide exchange events. However, it is not exactly understood how a disulfide bond is created de novo. DsbB, an Escherichia coli plasma membrane protein, is one of the enzymes that create a new disulfide bond within itself and in DsbA, the direct catalyst of protein disulfide bond formation in the periplasmic space. DsbB is associated with a cofactor, either ubiquinone or menaquinone, as a source of an oxidizing equivalent. The DsbB-bound quinone undergoes transition to a pink (lambdamax, approximately 500 nm, ubiquinone) or violet (lambdamax, approximately 550 nm, menaquinone)-colored state during the course of the DsbB enzymatic reaction. Here we show that not only the thiolate form of Cys-44 previously suggested but also Arg-48 in the alpha-helical arrangement is essential for the quinone transition. Quantum chemical simulations indicate that proper positioning of thiolate anion and ubiquinone in conjunction with positively charged guanidinium moiety of arginine allows the formation of a thiolate-ubiquinone charge transfer complex with absorption peaks at approximately 500 nm as well as a cysteinylquinone covalent adduct. We propose that the charge transfer state leads to the transition state adduct that accepts a nucleophilic attack from another cysteine to generate a disulfide bond de novo. A similar mechanism is conceivable for a class of eukaryotic dithiol oxidases having a FAD cofactor.

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Year:  2005        PMID: 16384917      PMCID: PMC1323469          DOI: 10.1073/pnas.0507570103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Paradoxical redox properties of DsbB and DsbA in the protein disulfide-introducing reaction cascade.

Authors:  Kenji Inaba; Koreaki Ito
Journal:  EMBO J       Date:  2002-06-03       Impact factor: 11.598

2.  Four cysteines of the membrane protein DsbB act in concert to oxidize its substrate DsbA.

Authors:  Hiroshi Kadokura; Jon Beckwith
Journal:  EMBO J       Date:  2002-05-15       Impact factor: 11.598

3.  A new FAD-binding fold and intersubunit disulfide shuttle in the thiol oxidase Erv2p.

Authors:  Einav Gross; Carolyn S Sevier; Andrea Vala; Chris A Kaiser; Deborah Fass
Journal:  Nat Struct Biol       Date:  2002-01

4.  Identification of the ubiquinone-binding domain in the disulfide catalyst disulfide bond protein B.

Authors:  Tong Xie; Linda Yu; Martin W Bader; James C A Bardwell; Chang-An Yu
Journal:  J Biol Chem       Date:  2001-11-06       Impact factor: 5.157

5.  Disulfide bonds are generated by quinone reduction.

Authors:  M W Bader; T Xie; C A Yu; J C Bardwell
Journal:  J Biol Chem       Date:  2000-08-25       Impact factor: 5.157

6.  Roles of a conserved arginine residue of DsbB in linking protein disulfide-bond-formation pathway to the respiratory chain of Escherichia coli.

Authors:  H Kadokura; M Bader; H Tian; J C Bardwell; J Beckwith
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

7.  Identification of a segment of DsbB essential for its respiration-coupled oxidation.

Authors:  T Kobayashi; Y Takahashi; K Ito
Journal:  Mol Microbiol       Date:  2001-01       Impact factor: 3.501

Review 8.  Oxidative protein folding in bacteria.

Authors:  Jean-Francois Collet; James C A Bardwell
Journal:  Mol Microbiol       Date:  2002-04       Impact factor: 3.501

9.  DsbB catalyzes disulfide bond formation de novo.

Authors:  James Regeimbal; James C A Bardwell
Journal:  J Biol Chem       Date:  2002-06-18       Impact factor: 5.157

10.  The N-terminal cysteine pair of yeast sulfhydryl oxidase Erv1p is essential for in vivo activity and interacts with the primary redox centre.

Authors:  Götz Hofhaus; Jeung-Eun Lee; Ivo Tews; Beate Rosenberg; Thomas Lisowsky
Journal:  Eur J Biochem       Date:  2003-04
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  22 in total

1.  Passive water-lipid peptide translocators with conformational switches: from single-molecule probe to cellular assay.

Authors:  Ariel Fernández; Alejandro Crespo; Axel Blau
Journal:  J Phys Chem B       Date:  2007-11-29       Impact factor: 2.991

Review 2.  Integrating protein homeostasis strategies in prokaryotes.

Authors:  Axel Mogk; Damon Huber; Bernd Bukau
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-04-01       Impact factor: 10.005

3.  The dynamic disulphide relay of quiescin sulphydryl oxidase.

Authors:  Assaf Alon; Iris Grossman; Yair Gat; Vamsi K Kodali; Frank DiMaio; Tevie Mehlman; Gilad Haran; David Baker; Colin Thorpe; Deborah Fass
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

Review 4.  Mechanisms of oxidative protein folding in the bacterial cell envelope.

Authors:  Hiroshi Kadokura; Jon Beckwith
Journal:  Antioxid Redox Signal       Date:  2010-10       Impact factor: 8.401

Review 5.  Chemistry and Enzymology of Disulfide Cross-Linking in Proteins.

Authors:  Deborah Fass; Colin Thorpe
Journal:  Chem Rev       Date:  2017-07-12       Impact factor: 60.622

6.  Reoxidation of the Thiol-Disulfide Oxidoreductase MdbA by a Bacterial Vitamin K Epoxide Reductase in the Biofilm-Forming Actinobacterium Actinomyces oris.

Authors:  Truc Thanh Luong; Melissa E Reardon-Robinson; Sara D Siegel; Hung Ton-That
Journal:  J Bacteriol       Date:  2017-04-25       Impact factor: 3.490

7.  Solid-state NMR study of the charge-transfer complex between ubiquinone-8 and disulfide bond generating membrane protein DsbB.

Authors:  Ming Tang; Lindsay J Sperling; Deborah A Berthold; Anna E Nesbitt; Robert B Gennis; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2011-03-04       Impact factor: 15.419

8.  Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB.

Authors:  Kenji Inaba; Satoshi Murakami; Atsushi Nakagawa; Hiroka Iida; Mai Kinjo; Koreaki Ito; Mamoru Suzuki
Journal:  EMBO J       Date:  2009-02-12       Impact factor: 11.598

Review 9.  Disulfide bond formation in prokaryotes: history, diversity and design.

Authors:  Feras Hatahet; Dana Boyd; Jon Beckwith
Journal:  Biochim Biophys Acta       Date:  2014-02-25

10.  NMR solution structure of the integral membrane enzyme DsbB: functional insights into DsbB-catalyzed disulfide bond formation.

Authors:  Yunpeng Zhou; Tomasz Cierpicki; Ricardo H Flores Jimenez; Stephen M Lukasik; Jeffrey F Ellena; David S Cafiso; Hiroshi Kadokura; Jon Beckwith; John H Bushweller
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

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