Literature DB >> 15923188

Differentiation-dependent alterations in histone methylation and chromatin architecture at the inducible chicken lysozyme gene.

Pascal Lefevre1, Claire Lacroix, Hiromi Tagoh, Maarten Hoogenkamp, Svitlana Melnik, Richard Ingram, Constanze Bonifer.   

Abstract

It is now well established that locus-wide chromatin remodeling and dynamic alterations of histone modifications are required for the developmentally regulated activation of tissue-specific genes. However, little is known about the dynamics of these events during cell differentiation and how chromatin of an entire gene locus responds to signal transduction processes. To address this issue we investigated chromatin accessibility, linker histone distribution, and the histone methylation status at the macrophage-specific chicken lysozyme locus and the ubiquitously expressed gas41 locus in multipotent precursor cell lines and BM2 monoblast cells. The latter can be induced to go through macrophage maturation by treatment with phorbol-12-myristate acetate and can be further stimulated with bacterial lipopolysaccharide. We show that expression of the lysozyme gene in undifferentiated monoblasts is low and that a high level of gene expression requires both cell differentiation and lipopolysaccharide stimulation. However, depletion of the linker histone H1 is observed already in lysozyme non-expressing multipotent precursor cells. In undifferentiated monoblasts, the lysozyme regulatory regions are marked by the presence of monomethylated histone H3 lysine 4, which becomes increasingly converted into trimethylated H3 lysine K4 during cell differentiation. We also present evidence for extensive, differentiation-dependent alterations in nuclease accessibility at the lysozyme promoter without alterations of nucleosome and transcription factor occupancy.

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Year:  2005        PMID: 15923188     DOI: 10.1074/jbc.M502422200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  21 in total

1.  Distinctive signatures of histone methylation in transcribed coding and noncoding human beta-globin sequences.

Authors:  AeRi Kim; Christine M Kiefer; Ann Dean
Journal:  Mol Cell Biol       Date:  2006-12-11       Impact factor: 4.272

2.  In vivo analysis of developmentally and evolutionarily dynamic protein-DNA interactions regulating transcription of the Pgk2 gene during mammalian spermatogenesis.

Authors:  Hirotaka Yoshioka; Christopher B Geyer; Jacey L Hornecker; Krishan T Patel; John R McCarrey
Journal:  Mol Cell Biol       Date:  2007-09-17       Impact factor: 4.272

Review 3.  Pioneer factors in embryonic stem cells and differentiation.

Authors:  Stephen T Smale
Journal:  Curr Opin Genet Dev       Date:  2010-07-16       Impact factor: 5.578

4.  Two distinct auto-regulatory loops operate at the PU.1 locus in B cells and myeloid cells.

Authors:  Mathias Leddin; Chiara Perrod; Maarten Hoogenkamp; Saeed Ghani; Salam Assi; Sven Heinz; Nicola K Wilson; George Follows; Jörg Schönheit; Lena Vockentanz; Ali M Mosammam; Wei Chen; Daniel G Tenen; David R Westhead; Berthold Göttgens; Constanze Bonifer; Frank Rosenbauer
Journal:  Blood       Date:  2011-01-14       Impact factor: 22.113

5.  Modulation of CTCF insulator function by transcription of a noncoding RNA.

Authors:  Chin-Tong Ong; Victor G Corces
Journal:  Dev Cell       Date:  2008-10       Impact factor: 12.270

6.  A modular enhancer is differentially regulated by GATA and NFAT elements that direct different tissue-specific patterns of nucleosome positioning and inducible chromatin remodeling.

Authors:  Andrew G Bert; Brett V Johnson; Euan W Baxter; Peter N Cockerill
Journal:  Mol Cell Biol       Date:  2007-02-05       Impact factor: 4.272

7.  Regulation of the interleukin-7 receptor alpha promoter by the Ets transcription factors PU.1 and GA-binding protein in developing B cells.

Authors:  Rodney P DeKoter; Brock L Schweitzer; Meghana B Kamath; Darrel Jones; Hiromi Tagoh; Constanze Bonifer; David A Hildeman; Kelly J Huang
Journal:  J Biol Chem       Date:  2007-03-28       Impact factor: 5.157

8.  Early chromatin unfolding by RUNX1: a molecular explanation for differential requirements during specification versus maintenance of the hematopoietic gene expression program.

Authors:  Maarten Hoogenkamp; Monika Lichtinger; Hanna Krysinska; Christophe Lancrin; Deborah Clarke; Andrew Williamson; Luca Mazzarella; Richard Ingram; Helle Jorgensen; Amanda Fisher; Daniel G Tenen; Valerie Kouskoff; Georges Lacaud; Constanze Bonifer
Journal:  Blood       Date:  2009-04-01       Impact factor: 22.113

9.  A two-step, PU.1-dependent mechanism for developmentally regulated chromatin remodeling and transcription of the c-fms gene.

Authors:  Hanna Krysinska; Maarten Hoogenkamp; Richard Ingram; Nicola Wilson; Hiromi Tagoh; Peter Laslo; Harinder Singh; Constanze Bonifer
Journal:  Mol Cell Biol       Date:  2006-11-20       Impact factor: 4.272

10.  Runx proteins regulate Foxp3 expression.

Authors:  Ludovica Bruno; Luca Mazzarella; Maarten Hoogenkamp; Arnulf Hertweck; Bradley S Cobb; Stephan Sauer; Suzana Hadjur; Marion Leleu; Yoshinori Naoe; Janice C Telfer; Constanze Bonifer; Ichiro Taniuchi; Amanda G Fisher; Matthias Merkenschlager
Journal:  J Exp Med       Date:  2009-10-19       Impact factor: 14.307

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