Literature DB >> 18854131

Modulation of CTCF insulator function by transcription of a noncoding RNA.

Chin-Tong Ong1, Victor G Corces.   

Abstract

CTCF plays diverse roles in the regulation of eukaryotic genes. A new study by Lefevre et al. in a recent issue of Molecular Cell reveals a novel mechanism in which noncoding RNA transcription and nucleosome repositioning evicts CTCF from a regulatory element to facilitate induction of a nearby gene.

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Year:  2008        PMID： 18854131      PMCID： PMC3040117          DOI： 10.1016/j.devcel.2008.09.013

Source DB:  PubMed          Journal:  Dev Cell        ISSN： 1534-5807            Impact factor:   12.270


  10 in total

1.  Multiple nucleosome positioning sites regulate the CTCF-mediated insulator function of the H19 imprinting control region.

Authors:  Meena Kanduri; Chandrasekhar Kanduri; Piero Mariano; Alexander A Vostrov; Wolfgang Quitschke; Victor Lobanenkov; Rolf Ohlsson
Journal:  Mol Cell Biol       Date:  2002-05       Impact factor: 4.272

Review 2.  Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum.

Authors:  Kannanganattu V Prasanth; David L Spector
Journal:  Genes Dev       Date:  2007-01-01       Impact factor: 11.361

Review 3.  We gather together: insulators and genome organization.

Authors:  Julie A Wallace; Gary Felsenfeld
Journal:  Curr Opin Genet Dev       Date:  2007-10-24       Impact factor: 5.578

4.  Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.

Authors:  John L Rinn; Michael Kertesz; Jordon K Wang; Sharon L Squazzo; Xiao Xu; Samantha A Brugmann; L Henry Goodnough; Jill A Helms; Peggy J Farnham; Eran Segal; Howard Y Chang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

5.  Differentiation-dependent alterations in histone methylation and chromatin architecture at the inducible chicken lysozyme gene.

Authors:  Pascal Lefevre; Claire Lacroix; Hiromi Tagoh; Maarten Hoogenkamp; Svitlana Melnik; Richard Ingram; Constanze Bonifer
Journal:  J Biol Chem       Date:  2005-05-27       Impact factor: 5.157

6.  Phosphoacetylation of histone H3 on c-fos- and c-jun-associated nucleosomes upon gene activation.

Authors:  A L Clayton; S Rose; M J Barratt; L C Mahadevan
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

7.  Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs.

Authors:  Kouji Hirota; Tomoichiro Miyoshi; Kazuto Kugou; Charles S Hoffman; Takehiko Shibata; Kunihiro Ohta
Journal:  Nature       Date:  2008-09-28       Impact factor: 49.962

8.  Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.

Authors:  Wenqiang Yu; Vasudeva Ginjala; Vinod Pant; Igor Chernukhin; Joanne Whitehead; France Docquier; Dawn Farrar; Gholamreza Tavoosidana; Rituparna Mukhopadhyay; Chandrasekhar Kanduri; Mitsuo Oshimura; Andrew P Feinberg; Victor Lobanenkov; Elena Klenova; Rolf Ohlsson
Journal:  Nat Genet       Date:  2004-09-07       Impact factor: 38.330

9.  Regulation of the transcription factor, CTCF, by phosphorylation with protein kinase CK2.

Authors:  Ayman El-Kady; Elena Klenova
Journal:  FEBS Lett       Date:  2005-02-28       Impact factor: 4.124

10.  The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription.

Authors:  Pascal Lefevre; James Witham; Claire E Lacroix; Peter N Cockerill; Constanze Bonifer
Journal:  Mol Cell       Date:  2008-10-10       Impact factor: 17.970
  10 in total
  4 in total

Review 1.  Biology and Mechanisms of Action of the Vitamin D Hormone.

Authors:  J Wesley Pike; Sylvia Christakos
Journal:  Endocrinol Metab Clin North Am       Date:  2017-09-29       Impact factor: 4.741

2.  Chromium disrupts chromatin organization and CTCF access to its cognate sites in promoters of differentially expressed genes.

Authors:  Andrew VonHandorf; Francisco Javier Sánchez-Martín; Jacek Biesiada; Hongxia Zhang; Xiang Zhang; Mario Medvedovic; Alvaro Puga
Journal:  Epigenetics       Date:  2018-05-03       Impact factor: 4.528

3.  CGGBP1 regulates CTCF occupancy at repeats.

Authors:  Divyesh Patel; Manthan Patel; Subhamoy Datta; Umashankar Singh
Journal:  Epigenetics Chromatin       Date:  2019-09-23       Impact factor: 4.954

4.  (5R)-5-Hydroxytriptolide (LLDT-8) induces substantial epigenetic mediated immune response network changes in fibroblast-like synoviocytes from rheumatoid arthritis patients.

Authors:  Shicheng Guo; Jia Liu; Ting Jiang; Dungyang Lee; Rongsheng Wang; Xinpeng Zhou; Yehua Jin; Yi Shen; Yan Wang; Fengmin Bai; Qin Ding; Grace Wang; Jianyong Zhang; Xiaodong Zhou; Steven J Schrodi; Dongyi He
Journal:  Sci Rep       Date:  2019-08-01       Impact factor: 4.379
  4 in total

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