Literature DB >> 15909983

Conserved glycine residues in the cytoplasmic domain of the aspartate receptor play essential roles in kinase coupling and on-off switching.

Matthew D Coleman1, Randal B Bass, Ryan S Mehan, Joseph J Falke.   

Abstract

The aspartate receptor of the bacterial chemotaxis pathway serves as a scaffold for the formation of a multiprotein signaling complex containing the receptor and the cytoplasmic pathway components. Within this complex, the receptor regulates the autophosphorylation activity of histidine kinase CheA, thereby controlling the signals sent to the flagellar motor and the receptor adaptation system. The receptor cytoplasmic domain, which controls the on-off switching of CheA, possesses 14 glycine residues that are highly conserved in related receptors. In principle, these conserved glycines could be required for static turns, bends, or close packing in the cytoplasmic domain, or they could be required for conformational dynamics during receptor on-off switching. To determine which glycines are essential and to probe their functional roles, we have substituted each conserved glycine with both alanine and cysteine, and then measured the effects on receptor function in vivo and in vitro. The results reveal a subset of six glycines which are required for receptor function during cellular chemotaxis. Two of these essential glycines (G388 and G391) are located at a hairpin turn at the distal end of the folded cytoplasmic domain, where they are required for the tertiary fold of the signaling subdomain and for CheA kinase activation. Three other essential glycines (G338, G339, and G437) are located at the border between the adaptation and signaling subdomains, where they play key roles in CheA kinase activation and on-off switching. These three glycines form a ring around the four-helix bundle that comprises the receptor cytoplasmic domain, yielding a novel architectural feature termed a bundle hinge. The final essential glycine (G455) is located in the adaptation subdomain where it is required for on-off switching. Overall, the findings confirm that six of the 14 conserved cytoplasmic glycines are essential for receptor function because they enable helix turns and bends required for native receptor structure, and in some cases for switching between the on and off signaling states. An initial working model proposes that the novel bundle hinge enables the four-helix bundle to bend, perhaps during the assembly of the receptor trimer of dimers or during on-off switching. More generally, the findings predict that certain human disease states, including specific cancers, could be triggered by lock-on mutations at essential glycine positions that control the on-off switching of receptors and signaling proteins.

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Year:  2005        PMID: 15909983      PMCID: PMC2895725          DOI: 10.1021/bi0501479

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  42 in total

Review 1.  Transmembrane signaling in bacterial chemoreceptors.

Authors:  J J Falke; G L Hazelbauer
Journal:  Trends Biochem Sci       Date:  2001-04       Impact factor: 13.807

2.  Two-state allosteric behavior in a single-domain signaling protein.

Authors:  B F Volkman; D Lipson; D E Wemmer; D Kern
Journal:  Science       Date:  2001-03-23       Impact factor: 47.728

3.  Four-helical-bundle structure of the cytoplasmic domain of a serine chemotaxis receptor.

Authors:  K K Kim; H Yokota; S H Kim
Journal:  Nature       Date:  1999-08-19       Impact factor: 49.962

Review 4.  Bacterial tactic responses.

Authors:  J P Armitage
Journal:  Adv Microb Physiol       Date:  1999       Impact factor: 3.517

5.  Covalent modification regulates ligand binding to receptor complexes in the chemosensory system of Escherichia coli.

Authors:  G Li; R M Weis
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

6.  Attractant regulation of the aspartate receptor-kinase complex: limited cooperative interactions between receptors and effects of the receptor modification state.

Authors:  J A Bornhorst; J J Falke
Journal:  Biochemistry       Date:  2000-08-08       Impact factor: 3.162

Review 7.  Structure of a conserved receptor domain that regulates kinase activity: the cytoplasmic domain of bacterial taxis receptors.

Authors:  J J Falke; S H Kim
Journal:  Curr Opin Struct Biol       Date:  2000-08       Impact factor: 6.809

8.  Adaptation mechanism of the aspartate receptor: electrostatics of the adaptation subdomain play a key role in modulating kinase activity.

Authors:  Diane J Starrett; Joseph J Falke
Journal:  Biochemistry       Date:  2005-02-08       Impact factor: 3.162

9.  The aspartate receptor cytoplasmic domain: in situ chemical analysis of structure, mechanism and dynamics.

Authors:  R B Bass; J J Falke
Journal:  Structure       Date:  1999-07-15       Impact factor: 5.006

10.  Signaling domain of the aspartate receptor is a helical hairpin with a localized kinase docking surface: cysteine and disulfide scanning studies.

Authors:  R B Bass; M D Coleman; J J Falke
Journal:  Biochemistry       Date:  1999-07-20       Impact factor: 3.162

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  42 in total

1.  Bacterial chemoreceptor arrays are hexagonally packed trimers of receptor dimers networked by rings of kinase and coupling proteins.

Authors:  Ariane Briegel; Xiaoxiao Li; Alexandrine M Bilwes; Kelly T Hughes; Grant J Jensen; Brian R Crane
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

2.  A possible degree of motional freedom in bacterial chemoreceptor cytoplasmic domains and its potential role in signal transduction.

Authors:  Weiguo Hu
Journal:  Int J Biochem Mol Biol       Date:  2011-02-25

3.  Characterization of a novel domain 'GATE' in the ABC protein DrrA and its role in drug efflux by the DrrAB complex.

Authors:  Han Zhang; Sadia Rahman; Wen Li; Guoxing Fu; Parjit Kaur
Journal:  Biochem Biophys Res Commun       Date:  2015-02-24       Impact factor: 3.575

Review 4.  Signaling and sensory adaptation in Escherichia coli chemoreceptors: 2015 update.

Authors:  John S Parkinson; Gerald L Hazelbauer; Joseph J Falke
Journal:  Trends Microbiol       Date:  2015-03-30       Impact factor: 17.079

5.  Ancient chemoreceptors retain their flexibility.

Authors:  John S Parkinson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-14       Impact factor: 11.205

6.  Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors.

Authors:  Roger P Alexander; Igor B Zhulin
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-13       Impact factor: 11.205

Review 7.  Aer on the inside looking out: paradigm for a PAS-HAMP role in sensing oxygen, redox and energy.

Authors:  Barry L Taylor
Journal:  Mol Microbiol       Date:  2007-09       Impact factor: 3.501

8.  Bacterial signaling and motility: sure bets.

Authors:  Robert Belas; Igor B Zhulin; Zhaomin Yang
Journal:  J Bacteriol       Date:  2008-01-18       Impact factor: 3.490

9.  The structure of a soluble chemoreceptor suggests a mechanism for propagating conformational signals.

Authors:  Abiola M Pollard; Alexandrine M Bilwes; Brian R Crane
Journal:  Biochemistry       Date:  2009-03-10       Impact factor: 3.162

10.  Structure-function relationships in the HAMP and proximal signaling domains of the aerotaxis receptor Aer.

Authors:  Kylie J Watts; Mark S Johnson; Barry L Taylor
Journal:  J Bacteriol       Date:  2008-01-18       Impact factor: 3.490

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