Literature DB >> 11264542

Two-state allosteric behavior in a single-domain signaling protein.

B F Volkman1, D Lipson, D E Wemmer, D Kern.   

Abstract

Protein actions are usually discussed in terms of static structures, but function requires motion. We find a strong correlation between phosphorylation-driven activation of the signaling protein NtrC and microsecond time-scale backbone dynamics. Using nuclear magnetic resonance relaxation, we characterized the motions of NtrC in three functional states: unphosphorylated (inactive), phosphorylated (active), and a partially active mutant. These dynamics are indicative of exchange between inactive and active conformations. Both states are populated in unphosphorylated NtrC, and phosphorylation shifts the equilibrium toward the active species. These results support a dynamic population shift between two preexisting conformations as the underlying mechanism of activation.

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Year:  2001        PMID: 11264542     DOI: 10.1126/science.291.5512.2429

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  247 in total

Review 1.  Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations.

Authors:  Buyong Ma; Maxim Shatsky; Haim J Wolfson; Ruth Nussinov
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

2.  Functional dynamics in the active site of the ribonuclease binase.

Authors:  L Wang; Y Pang; T Holder; J R Brender; A V Kurochkin; E R Zuiderweg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

3.  Quantitative analysis of aspartate receptor signaling complex reveals that the homogeneous two-state model is inadequate: development of a heterogeneous two-state model.

Authors:  Joshua A Bornhorst; Joseph J Falke
Journal:  J Mol Biol       Date:  2003-03-07       Impact factor: 5.469

4.  Molecular dynamics of the FixJ receiver domain: movement of the beta4-alpha4 loop correlates with the in and out flip of Phe101.

Authors:  Philippe Roche; Liliane Mouawad; David Perahia; Jean-Pierre Samama; Daniel Kahn
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

5.  Genetic analysis of response regulator activation in bacterial chemotaxis suggests an intermolecular mechanism.

Authors:  Sandra Da Re; Tatiana Tolstykh; Peter M Wolanin; Jeffry B Stock
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

6.  Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism.

Authors:  Stanly B Williams; Ioannis Vakonakis; Susan S Golden; Andy C LiWang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-15       Impact factor: 11.205

Review 7.  Allosteric regulation of protease activity by small molecules.

Authors:  Aimee Shen
Journal:  Mol Biosyst       Date:  2010-06-10

8.  A conformational switch in the CRIB-PDZ module of Par-6.

Authors:  Dustin S Whitney; Francis C Peterson; Brian F Volkman
Journal:  Structure       Date:  2011-11-09       Impact factor: 5.006

9.  Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.

Authors:  Olga Otrusinová; Gabriel Demo; Petr Padrta; Zuzana Jaseňáková; Blanka Pekárová; Zuzana Gelová; Agnieszka Szmitkowska; Pavel Kadeřávek; Séverine Jansen; Milan Zachrdla; Tomáš Klumpler; Jaromír Marek; Jozef Hritz; Lubomír Janda; Hideo Iwaï; Michaela Wimmerová; Jan Hejátko; Lukáš Žídek
Journal:  J Biol Chem       Date:  2017-08-31       Impact factor: 5.157

10.  Hydrogen exchange and ligand binding: ligand-dependent and ligand-independent protection in the Src SH3 domain.

Authors:  David Wildes; Susan Marqusee
Journal:  Protein Sci       Date:  2004-12-02       Impact factor: 6.725

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