Literature DB >> 15908961

A D-amino acid editing module coupled to the translational apparatus in archaea.

Shweta Dwivedi1, Shobha P Kruparani, Rajan Sankaranarayanan.   

Abstract

We report the crystal structure of an archaea-specific editing domain of threonyl-tRNA synthetase that reveals a marked structural similarity to D-amino acid deacylases found in eubacteria and eukaryotes. The domain can bind D-amino acids despite a low sequence identity to other D-amino acid deacylases. These results together indicate the presence of these deacylases in all three kingdoms of life. This underlines an important role they may have played in enforcing homochirality during translation.

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Year:  2005        PMID: 15908961     DOI: 10.1038/nsmb943

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  20 in total

1.  Mechanistic insights into cognate substrate discrimination during proofreading in translation.

Authors:  Tanweer Hussain; Venu Kamarthapu; Shobha P Kruparani; Mandar V Deshmukh; Rajan Sankaranarayanan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

Review 2.  Emergence and evolution.

Authors:  Tammy J Bullwinkle; Michael Ibba
Journal:  Top Curr Chem       Date:  2014

3.  Cloning, expression, purification, crystallization and preliminary X-ray crystallographic analyses of threonyl-tRNA synthetase editing domain from Aeropyrum pernix.

Authors:  Sadeem Ahmad; Antony S K Sravankumar; Shobha P Kruparani; Rajan Sankaranarayanan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-10-30

4.  Mechanism of tRNA-dependent editing in translational quality control.

Authors:  Jiqiang Ling; Hervé Roy; Michael Ibba
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-21       Impact factor: 11.205

Review 5.  Structural analyses clarify the complex control of mistranslation by tRNA synthetases.

Authors:  Min Guo; Paul Schimmel
Journal:  Curr Opin Struct Biol       Date:  2011-12-10       Impact factor: 6.809

6.  Transition states. Trapping a transition state in a computationally designed protein bottle.

Authors:  Aaron D Pearson; Jeremy H Mills; Yifan Song; Fariborz Nasertorabi; Gye Won Han; David Baker; Raymond C Stevens; Peter G Schultz
Journal:  Science       Date:  2015-02-20       Impact factor: 47.728

7.  Restoring species-specific posttransfer editing activity to a synthetase with a defunct editing domain.

Authors:  Julius SternJohn; Sanchita Hati; Paul G Siliciano; Karin Musier-Forsyth
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-05       Impact factor: 11.205

8.  Translational Quality Control by Bacterial Threonyl-tRNA Synthetases.

Authors:  Xiao-Long Zhou; Yun Chen; Zhi-Peng Fang; Zhi-Rong Ruan; Yong Wang; Ru-Juan Liu; Mei-Qin Xue; En-Duo Wang
Journal:  J Biol Chem       Date:  2016-08-19       Impact factor: 5.157

9.  Ligand-bound structures provide atomic snapshots for the catalytic mechanism of D-amino acid deacylase.

Authors:  Tarun Kumar Bhatt; Manickam Yogavel; Sandra Wydau; Ritu Berwal; Amit Sharma
Journal:  J Biol Chem       Date:  2009-12-09       Impact factor: 5.157

10.  A genomic glimpse of aminoacyl-tRNA synthetases in malaria parasite Plasmodium falciparum.

Authors:  Tarun Kumar Bhatt; Charu Kapil; Sameena Khan; Mohamad Aman Jairajpuri; Vinay Sharma; Daniele Santoni; Francesco Silvestrini; Elisabetta Pizzi; Amit Sharma
Journal:  BMC Genomics       Date:  2009-12-31       Impact factor: 3.969

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