Literature DB >> 15896685

The continuing evolution of shotgun proteomics.

Selene K Swanson1, Michael P Washburn.   

Abstract

Shotgun proteomics has emerged as a powerful approach for the analysis of complex protein mixtures, including biofluids, tissues, cells, organelles or protein complexes. Having evolved from the integration of chromatography and mass spectrometry, innovations in sample preparation, multidimensional chromatography, mass spectrometry and proteomic informatics continually facilitate, enable and challenge shotgun proteomics. As a result, shotgun proteomics continues to evolve and enable new areas of biological research, and is beginning to impact human disease diagnosis and therapeutic intervention.

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Year:  2005        PMID： 15896685     DOI： 10.1016/S1359-6446(05)03450-1

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN： 1359-6446            Impact factor:   7.851


  19 in total

1.  Improving liquid chromatography-mass spectrometry sensitivity using a subambient pressure ionization with nanoelectrospray (SPIN) interface.

Authors:  Keqi Tang; Jason S Page; Ioan Marginean; Ryan T Kelly; Richard D Smith
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-22       Impact factor: 3.109

2.  Comprehensive analysis of proteins of pH fractionated samples using monolithic LC/MS/MS, intact MW measurement and MALDI-QIT-TOF MS.

Authors:  Chul Yoo; Tasneem H Patwa; Paweena Kreunin; Fred R Miller; Christian G Huber; Alexey I Nesvizhskii; David M Lubman
Journal:  J Mass Spectrom       Date:  2007-03       Impact factor: 1.982

3.  Subambient pressure ionization with nanoelectrospray source and interface for improved sensitivity in mass spectrometry.

Authors:  Jason S Page; Keqi Tang; Ryan T Kelly; Richard D Smith
Journal:  Anal Chem       Date:  2008-02-01       Impact factor: 6.986

4.  Isolation and proteomic analysis of the halotolerant alga Dunaliella salina flagella using shotgun strategy.

Authors:  Yanlong Jia; Lexun Xue; Jie Li; Hongtao Liu
Journal:  Mol Biol Rep       Date:  2009-05-13       Impact factor: 2.316

5.  Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine-specific isobaric tags.

Authors:  Jun Hu; Jin Qian; Oleg Borisov; Sanqiang Pan; Yan Li; Tong Liu; Longwen Deng; Kenneth Wannemacher; Michael Kurnellas; Christa Patterson; Stella Elkabes; Hong Li
Journal:  Proteomics       Date:  2006-08       Impact factor: 3.984

6.  A bayesian approach to protein inference problem in shotgun proteomics.

Authors:  Yong Fuga Li; Randy J Arnold; Yixue Li; Predrag Radivojac; Quanhu Sheng; Haixu Tang
Journal:  J Comput Biol       Date:  2009-08       Impact factor: 1.479

Review 7.  Applications of proteomics in the study of inflammatory bowel diseases: Current status and future directions with available technologies.

Authors:  Philip Alex; Marjan Gucek; Xuhang Li
Journal:  Inflamm Bowel Dis       Date:  2009-04       Impact factor: 5.325

8.  A tool to evaluate correspondence between extraction ion chromatographic peaks and peptide-spectrum matches in shotgun proteomics experiments.

Authors:  Cristian I Ruse; Samantha Peacock; Cornel Ghiban; Keith Rivera; Darryl J Pappin; Peter Leopold
Journal:  Proteomics       Date:  2013-07-11       Impact factor: 3.984

9.  Ionization and transmission efficiency in an electrospray ionization-mass spectrometry interface.

Authors:  Jason S Page; Ryan T Kelly; Keqi Tang; Richard D Smith
Journal:  J Am Soc Mass Spectrom       Date:  2007-06-02       Impact factor: 3.109

10.  STAT1-dependent expression of energy metabolic pathways links tumour growth and radioresistance to the Warburg effect.

Authors:  Sean P Pitroda; Bassam T Wakim; Ravi F Sood; Mara G Beveridge; Michael A Beckett; Dhara M MacDermed; Ralph R Weichselbaum; Nikolai N Khodarev
Journal:  BMC Med       Date:  2009-11-05       Impact factor: 8.775
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