Literature DB >> 15888313

Transglycosylation: a mechanism for RNA modification (and editing?).

George A Garcia1, Jeffrey D Kittendorf.   

Abstract

The vast majority of the ca. 100 chemically distinct modified nucleosides in RNA appear to arise via the chemical transformation of a genetically encoded nucleoside. Two notable exceptions are queuosine and pseudouridine, which are incorporated into tRNA via transglycosylation. Transglycosylation is an extremely efficient process for incorporating highly modified bases such as queuine into RNA. Transglycosylation is also a requisite process for "isomerizing" an N-nucleoside into a C-nucleoside as is the case for pseudouridine formation. Finally, transglycosylation is an attractive possibility for certain RNA editing events (e.g., pyrimidine to purine conversions) that cannot occur via the known, more straightforward enzymatic reactions (e.g., deaminations). This review discusses what is known about the mechanisms of transglycosylation for the queuine and pseudouridine RNA modifications and will speculate about a potential role for transglycosylation in certain RNA editing events.

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Year:  2005        PMID: 15888313      PMCID: PMC2802272          DOI: 10.1016/j.bioorg.2005.01.001

Source DB:  PubMed          Journal:  Bioorg Chem        ISSN: 0045-2068            Impact factor:   5.275


  103 in total

1.  Chips off the old block.

Authors:  Eugene G Mueller
Journal:  Nat Struct Biol       Date:  2002-05

2.  The RNA modification database.

Authors:  P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

3.  Loss of tRNA 5-methyluridine methyltransferase and pseudouridine synthetase activities in 5-fluorouracil and 1-(tetrahydro-2-furanyl)-5-fluorouracil (ftorafur)-treated Escherichia coli.

Authors:  D A Frendewey; D M Kladianos; V G Moore; I I Kaiser
Journal:  Biochim Biophys Acta       Date:  1982-04-26

Review 4.  Apobec-1 and apolipoprotein B mRNA editing.

Authors:  L Chan; B H Chang; M Nakamuta; W H Li; L C Smith
Journal:  Biochim Biophys Acta       Date:  1997-03-10

5.  Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA.

Authors:  S Massenet; Y Motorin; D L Lafontaine; E C Hurt; H Grosjean; C Branlant
Journal:  Mol Cell Biol       Date:  1999-03       Impact factor: 4.272

6.  tRNA-guanine transglycosylase from Escherichia coli. Overexpression, purification and quaternary structure.

Authors:  G A Garcia; K A Koch; S Chong
Journal:  J Mol Biol       Date:  1993-05-20       Impact factor: 5.469

7.  tRNA-guanine transglycosylase from Escherichia coli: structure-activity studies investigating the role of the aminomethyl substituent of the heterocyclic substrate PreQ1.

Authors:  G C Hoops; L B Townsend; G A Garcia
Journal:  Biochemistry       Date:  1995-11-21       Impact factor: 3.162

8.  Identification of glutamic acid 78 as the active site nucleophile in Bacillus subtilis xylanase using electrospray tandem mass spectrometry.

Authors:  S Miao; L Ziser; R Aebersold; S G Withers
Journal:  Biochemistry       Date:  1994-06-14       Impact factor: 3.162

9.  Identification of the active site nucleophile in nucleoside 2-deoxyribosyltransferase as glutamic acid 98.

Authors:  D J Porter; B M Merrill; S A Short
Journal:  J Biol Chem       Date:  1995-06-30       Impact factor: 5.157

10.  Unequivocal identification of Asp-214 as the catalytic nucleophile of Saccharomyces cerevisiae alpha-glucosidase using 5-fluoro glycosyl fluorides.

Authors:  J D McCarter; S G Withers
Journal:  J Biol Chem       Date:  1996-03-22       Impact factor: 5.157

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  14 in total

1.  Role of aspartate 143 in Escherichia coli tRNA-guanine transglycosylase: alteration of heterocyclic substrate specificity.

Authors:  Katherine Abold Todorov; George A Garcia
Journal:  Biochemistry       Date:  2006-01-17       Impact factor: 3.162

Review 2.  Structure and function of preQ1 riboswitches.

Authors:  Catherine D Eichhorn; Mijeong Kang; Juli Feigon
Journal:  Biochim Biophys Acta       Date:  2014-05-04

3.  Characterization of the human tRNA-guanine transglycosylase: confirmation of the heterodimeric subunit structure.

Authors:  Yi-Chen Chen; Vincent P Kelly; Stefanie V Stachura; George A Garcia
Journal:  RNA       Date:  2010-03-30       Impact factor: 4.942

4.  Altered editing in RNA editing adenosine deaminase ADAR2 gene transcripts of systemic lupus erythematosus T lymphocytes.

Authors:  Dama Laxminarayana; Kenneth S O'Rourke; Stefan Maas; Irene Olorenshaw
Journal:  Immunology       Date:  2007-03-22       Impact factor: 7.397

5.  Differential heterocyclic substrate recognition by, and pteridine inhibition of E. coli and human tRNA-guanine transglycosylases.

Authors:  C Eric Thomas; Yi-Chen Chen; George A Garcia
Journal:  Biochem Biophys Res Commun       Date:  2011-05-24       Impact factor: 3.575

6.  Evolving insights into RNA modifications and their functional diversity in the brain.

Authors:  Sarah Nainar; Paul R Marshall; Christina R Tyler; Robert C Spitale; Timothy W Bredy
Journal:  Nat Neurosci       Date:  2016-09-27       Impact factor: 24.884

7.  Queuosine formation in eukaryotic tRNA occurs via a mitochondria-localized heteromeric transglycosylase.

Authors:  Coilin Boland; Patti Hayes; Ismael Santa-Maria; Susumu Nishimura; Vincent P Kelly
Journal:  J Biol Chem       Date:  2009-05-04       Impact factor: 5.157

Review 8.  Transfer RNA modifications: nature's combinatorial chemistry playground.

Authors:  Jane E Jackman; Juan D Alfonzo
Journal:  Wiley Interdiscip Rev RNA       Date:  2012-11-08       Impact factor: 9.957

9.  Evolution of eukaryal tRNA-guanine transglycosylase: insight gained from the heterocyclic substrate recognition by the wild-type and mutant human and Escherichia coli tRNA-guanine transglycosylases.

Authors:  Yi-Chen Chen; Allen F Brooks; DeeAnne M Goodenough-Lashua; Jeffrey D Kittendorf; Hollis D Showalter; George A Garcia
Journal:  Nucleic Acids Res       Date:  2010-12-03       Impact factor: 16.971

10.  Insights into ligand binding to PreQ1 Riboswitch Aptamer from molecular dynamics simulations.

Authors:  Zhou Gong; Yunjie Zhao; Changjun Chen; Yong Duan; Yi Xiao
Journal:  PLoS One       Date:  2014-03-24       Impact factor: 3.240

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