Literature DB >> 15870204

Ab initio molecular dynamics: concepts, recent developments, and future trends.

Radu Iftimie1, Peter Minary, Mark E Tuckerman.   

Abstract

The methodology of ab initio molecular dynamics, wherein finite-temperature dynamical trajectories are generated by using forces computed "on the fly" from electronic structure calculations, has had a profound influence in modern theoretical research. Ab initio molecular dynamics allows chemical processes in condensed phases to be studied in an accurate and unbiased manner, leading to new paradigms in the elucidation of microscopic mechanisms, rationalization of experimental data, and testable predictions of new phenomena. The purpose of this work is to give a brief introduction to the technique and to review several important recent developments in the field. Several illustrative examples showing the power of the technique have been chosen. Perspectives on future directions in the field also will be given.

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Year:  2005        PMID: 15870204      PMCID: PMC1100773          DOI: 10.1073/pnas.0500193102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  Towards an assessment of the accuracy of density functional theory for first principles simulations of water.

Authors:  Jeffrey C Grossman; Eric Schwegler; Erik W Draeger; François Gygi; Giulia Galli
Journal:  J Chem Phys       Date:  2004-01-01       Impact factor: 3.488

2.  On-the-fly localization of electronic orbitals in Car-Parrinello molecular dynamics.

Authors:  Radu Iftimie; Jordan W Thomas; Mark E Tuckerman
Journal:  J Chem Phys       Date:  2004-02-01       Impact factor: 3.488

3.  Scalable fine-grained parallelization of plane-wave-based ab initio molecular dynamics for large supercomputers.

Authors:  Ramkumar V Vadali; Yan Shi; Sameer Kumar; Laxmikant V Kale; Mark E Tuckerman; Glenn J Martyna
Journal:  J Comput Chem       Date:  2004-12       Impact factor: 3.376

4.  Core-level spectroscopy of the clean Si(001) surface: Charge transfer within asymmetric dimers of the 2 x 1 and c(4 x 2) reconstructions.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-09-07       Impact factor: 9.161

5.  Green's-function approach to linear response in solids.

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Journal:  Phys Rev Lett       Date:  1987-05-04       Impact factor: 9.161

6.  Unified approach for molecular dynamics and density-functional theory.

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Journal:  Phys Rev Lett       Date:  1985-11-25       Impact factor: 9.161

7.  Efficient quantum monte carlo energies for molecular dynamics simulations.

Authors:  Jeffrey C Grossman; Lubos Mitas
Journal:  Phys Rev Lett       Date:  2005-02-10       Impact factor: 9.161

8.  Reaction pathway of the [4 + 2] Diels-Alder adduct formation on Si(100)-2 x 1.

Authors:  Peter Minary; Mark E Tuckerman
Journal:  J Am Chem Soc       Date:  2004-11-03       Impact factor: 15.419

9.  Efficient pseudopotentials for plane-wave calculations.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1991-01-15

10.  Adiabatic density-functional perturbation theory.

Authors: 
Journal:  Phys Rev A       Date:  1995-08       Impact factor: 3.140

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  19 in total

1.  Polarizable empirical force field for the primary and secondary alcohol series based on the classical Drude model.

Authors:  Victor M Anisimov; Igor V Vorobyov; Benoît Roux; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2007       Impact factor: 6.006

2.  Hybrid dynamics simulation engine for metalloproteins.

Authors:  Manuel Sparta; David Shirvanyants; Feng Ding; Nikolay V Dokholyan; Anastassia N Alexandrova
Journal:  Biophys J       Date:  2012-08-22       Impact factor: 4.033

3.  Polarizable empirical force field for sulfur-containing compounds based on the classical Drude oscillator model.

Authors:  Xiao Zhu; Alexander D MacKerell
Journal:  J Comput Chem       Date:  2010-09       Impact factor: 3.376

4.  Computational analysis of mechanical behavior and potential energy of thermoresponsive copper-tantalum nanoalloy.

Authors:  Mahesh Kumar Gupta; Vinay Panwar; R P Mahapatra
Journal:  J Mol Model       Date:  2022-06-13       Impact factor: 1.810

5.  Biomolecular modeling thrives in the age of technology.

Authors:  Tamar Schlick; Stephanie Portillo-Ledesma
Journal:  Nat Comput Sci       Date:  2021-05-20

6.  A comparison of three DFT exchange-correlation functionals and two basis sets for the prediction of the conformation distribution of hydrated polyglycine.

Authors:  Ying Yuan; Feng Wang
Journal:  J Chem Phys       Date:  2021-09-07       Impact factor: 4.304

7.  Solid electrolyte interphase formation between the Li0.29La0.57TiO3 solid-state electrolyte and a Li-metal anode: an ab initio molecular dynamics study.

Authors:  Diego E Galvez-Aranda; Jorge M Seminario
Journal:  RSC Adv       Date:  2020-03-02       Impact factor: 4.036

Review 8.  Implicit Solvation Methods for Catalysis at Electrified Interfaces.

Authors:  Stefan Ringe; Nicolas G Hörmann; Harald Oberhofer; Karsten Reuter
Journal:  Chem Rev       Date:  2021-12-20       Impact factor: 72.087

9.  Force Field for Water Based on Neural Network.

Authors:  Hao Wang; Weitao Yang
Journal:  J Phys Chem Lett       Date:  2018-06-04       Impact factor: 6.475

10.  Statistical thermodynamics of biomembranes.

Authors:  Ram V Devireddy
Journal:  Cryobiology       Date:  2009-05-19       Impact factor: 2.487

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