Literature DB >> 15868422

Whole-genome views of chromatin structure.

Martin Lodén1, Bas van Steensel.   

Abstract

DNA in eukaryotes is packed into chromatin. The basic component of chromatin is the nucleosome consisting of DNA wrapped around a histone octamer. Inside the cell nucleus, chromatin is folded into higher-order structures through various mechanisms, including repositioning of nucleosomes along the DNA, packing of nucleosomes into more condensed 3-dimensional configurations, looping of chromatin fibres, and tethering of chromosomal regions to nuclear structures. Over the past few years, new microarray-based methods have been developed for the genome-wide mapping of various aspects of chromatin structure. These methods are beginning to provide insights into the different types of chromatin and the architectural principles that govern the 3-dimensional organisation of the genome inside the nucleus.

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Year:  2005        PMID: 15868422     DOI: 10.1007/s10577-005-2166-z

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  11 in total

1.  Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide.

Authors:  Bhargavi Rao; Yoichiro Shibata; Brian D Strahl; Jason D Lieb
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

Review 2.  Applying whole-genome studies of epigenetic regulation to study human disease.

Authors:  J D Lieb; S Beck; M L Bulyk; P Farnham; N Hattori; S Henikoff; X S Liu; K Okumura; K Shiota; T Ushijima; J M Greally
Journal:  Cytogenet Genome Res       Date:  2006       Impact factor: 1.636

Review 3.  Nuclear shape, mechanics, and mechanotransduction.

Authors:  Kris Noel Dahl; Alexandre J S Ribeiro; Jan Lammerding
Journal:  Circ Res       Date:  2008-06-06       Impact factor: 17.367

Review 4.  The current state of chromatin immunoprecipitation.

Authors:  Philippe Collas
Journal:  Mol Biotechnol       Date:  2010-05       Impact factor: 2.695

Review 5.  Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier.

Authors:  Akira Watanabe; Yasuhiro Yamada; Shinya Yamanaka
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-05       Impact factor: 6.237

6.  Enhancer-promoter communication at the yellow gene of Drosophila melanogaster: diverse promoters participate in and regulate trans interactions.

Authors:  Anne M Lee; C-Ting Wu
Journal:  Genetics       Date:  2006-10-22       Impact factor: 4.562

7.  Epigenetic regulation of stem cell maintenance in the Drosophila testis via the nucleosome-remodeling factor NURF.

Authors:  Christopher M Cherry; Erika L Matunis
Journal:  Cell Stem Cell       Date:  2010-06-04       Impact factor: 24.633

8.  Effect of molecular crowding and ionic strength on the isothermal hybridization of oligonucleotides.

Authors:  Marie Z Markarian; Joseph B Schlenoff
Journal:  J Phys Chem B       Date:  2010-08-19       Impact factor: 2.991

Review 9.  Analysis of epigenetic alterations to chromatin during development.

Authors:  Meghan E Minard; Abhinav K Jain; Michelle Craig Barton
Journal:  Genesis       Date:  2009-08       Impact factor: 2.487

10.  Prediction of nucleosome positioning based on transcription factor binding sites.

Authors:  Xianfu Yi; Yu-Dong Cai; Zhisong He; Weiren Cui; Xiangyin Kong
Journal:  PLoS One       Date:  2010-09-01       Impact factor: 3.240

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