Literature DB >> 16717444

Applying whole-genome studies of epigenetic regulation to study human disease.

J D Lieb1, S Beck, M L Bulyk, P Farnham, N Hattori, S Henikoff, X S Liu, K Okumura, K Shiota, T Ushijima, J M Greally.   

Abstract

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Year:  2006        PMID： 16717444      PMCID： PMC2734277          DOI： 10.1159/000091922

Source DB:  PubMed          Journal:  Cytogenet Genome Res        ISSN： 1424-8581            Impact factor:   1.636


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  200 in total

1.  BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

Authors:  X Liu; D L Brutlag; J S Liu
Journal:  Pac Symp Biocomput       Date:  2001

2.  Regulatory element detection using correlation with expression.

Authors:  H J Bussemaker; H Li; E D Siggia
Journal:  Nat Genet       Date:  2001-02       Impact factor: 38.330

3.  Exploring the DNA-binding specificities of zinc fingers with DNA microarrays.

Authors:  M L Bulyk; X Huang; Y Choo; G M Church
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-12       Impact factor: 11.205

Review 4.  Location analysis of DNA-bound proteins at the whole-genome level: untangling transcriptional regulatory networks.

Authors:  B Nal; E Mohr; P Ferrier
Journal:  Bioessays       Date:  2001-06       Impact factor: 4.345

5.  Accelerated age-related CpG island methylation in ulcerative colitis.

Authors:  J P Issa; N Ahuja; M Toyota; M P Bronner; T A Brentnall
Journal:  Cancer Res       Date:  2001-05-01       Impact factor: 12.701

6.  The CpG island promoter of the human proopiomelanocortin gene is methylated in nonexpressing normal tissue and tumors and represses expression.

Authors:  J Newell-Price; P King; A J Clark
Journal:  Mol Endocrinol       Date:  2001-02

7.  The endothelin receptor B (EDNRB) promoter displays heterogeneous, site specific methylation patterns in normal and tumor cells.

Authors:  M M Pao; M Tsutsumi; G Liang; E Uzvolgyi; F A Gonzales; P A Jones
Journal:  Hum Mol Genet       Date:  2001-04-15       Impact factor: 6.150

8.  Chromatin profiling using targeted DNA adenine methyltransferase.

Authors:  B van Steensel; J Delrow; S Henikoff
Journal:  Nat Genet       Date:  2001-03       Impact factor: 38.330

9.  Mouse cloning with nucleus donor cells of different age and type.

Authors:  T Wakayama; R Yanagimachi
Journal:  Mol Reprod Dev       Date:  2001-04       Impact factor: 2.609

10.  DNA methylation variation in cloned mice.

Authors:  J Ohgane; T Wakayama; Y Kogo; S Senda; N Hattori; S Tanaka; R Yanagimachi; K Shiota
Journal:  Genesis       Date:  2001-06       Impact factor: 2.487
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  21 in total

Review 1.  Epigenetic programming and risk: the birthplace of cardiovascular disease?

Authors:  Maria Cristina Vinci; Gianluca Polvani; Maurizio Pesce
Journal:  Stem Cell Rev Rep       Date:  2013-06       Impact factor: 5.739

Review 2.  Developmental origins of adult disease.

Authors:  Rebecca A Simmons
Journal:  Pediatr Clin North Am       Date:  2009-06       Impact factor: 3.278

Review 3.  Principles and challenges of genomewide DNA methylation analysis.

Authors:  Peter W Laird
Journal:  Nat Rev Genet       Date:  2010-03       Impact factor: 53.242

Review 4.  Defining the momiome: Promiscuous information transfer by mobile mitochondria and the mitochondrial genome.

Authors:  Bhupendra Singh; Josephine S Modica-Napolitano; Keshav K Singh
Journal:  Semin Cancer Biol       Date:  2017-05-11       Impact factor: 15.707

5.  Epigenetic switching by the metabolism-sensing factors in the generation of orexin neurons from mouse embryonic stem cells.

Authors:  Koji Hayakawa; Mitsuko Hirosawa; Yasuyuki Tabei; Daisuke Arai; Satoshi Tanaka; Noboru Murakami; Shintaro Yagi; Kunio Shiota
Journal:  J Biol Chem       Date:  2013-04-26       Impact factor: 5.157

6.  Tissue-Specific Expression of Estrogen Receptor 1 Is Regulated by DNA Methylation in a T-DMR.

Authors:  Ryo Maekawa; Shun Sato; Maki Okada; Lifa Lee; Isao Tamura; Kosuke Jozaki; Takuya Kajimura; Hiromi Asada; Yoshiaki Yamagata; Hiroshi Tamura; Shigeru Yamamoto; Norihiro Sugino
Journal:  Mol Endocrinol       Date:  2015-12-18

Review 7.  Epigenetic mechanisms in the development of type 2 diabetes.

Authors:  Sara E Pinney; Rebecca A Simmons
Journal:  Trends Endocrinol Metab       Date:  2009-10-26       Impact factor: 12.015

8.  DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression.

Authors:  Shintaro Yagi; Keiji Hirabayashi; Shinya Sato; Wei Li; Yoko Takahashi; Tsutomu Hirakawa; Guoying Wu; Naoko Hattori; Naka Hattori; Jun Ohgane; Satoshi Tanaka; X Shirley Liu; Kunio Shiota
Journal:  Genome Res       Date:  2008-10-29       Impact factor: 9.043

9.  Reactivation of hyperglycemia-induced hypocretin (HCRT) gene silencing by N-acetyl-d-mannosamine in the orexin neurons derived from human iPS cells.

Authors:  Koji Hayakawa; Yasuharu Sakamoto; Osamu Kanie; Atsuko Ohtake; Shusaku Daikoku; Yukishige Ito; Kunio Shiota
Journal:  Epigenetics       Date:  2017-11-24       Impact factor: 4.528

10.  Silencing of Transposable Elements Mediated by 5-mC and Compensation of the Heterochromatin Content by Presence of B Chromosomes in Astyanax scabripinnis.

Authors:  Patrícia Barbosa; Zelinda Schemczssen-Graeff; André Marques; Maelin da Silva; Giovani Marino Favero; Bernardo Passos Sobreiro; Mara Cristina de Almeida; Orlando Moreira-Filho; Duílio Mazzoni Zerbinato de Andrade Silva; Fábio Porto-Foresti; Fausto Foresti; Roberto Ferreira Artoni
Journal:  Cells       Date:  2021-05-11       Impact factor: 6.600
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