Literature DB >> 23166402

Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier.

Akira Watanabe1, Yasuhiro Yamada, Shinya Yamanaka.   

Abstract

The differentiation and reprogramming of cells are accompanied by drastic changes in the epigenetic profiles of cells. Waddington's classical model clearly describes how differentiating cells acquire their cell identity as the developmental potential of an individual cell population declines towards the terminally differentiated state. The recent discovery of induced pluripotent stem cells as well as of somatic cell nuclear transfer provided evidence that the process of differentiation can be reversed. The identity of somatic cells is strictly protected by an epigenetic barrier, and these cells acquire pluripotency by breaking the epigenetic barrier by reprogramming factors such as Oct3/4, Sox2, Klf4, Myc and LIN28. This review covers the current understanding of the spatio-temporal regulation of epigenetics in pluripotent and differentiated cells, and discusses how cells determine their identity and overcome the epigenetic barrier during the reprogramming process.

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Year:  2013        PMID: 23166402      PMCID: PMC3539367          DOI: 10.1098/rstb.2012.0292

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  182 in total

Review 1.  Epigenetic regulation of stem cell fate.

Authors:  Victoria V Lunyak; Michael G Rosenfeld
Journal:  Hum Mol Genet       Date:  2008-04-15       Impact factor: 6.150

2.  Dissecting direct reprogramming through integrative genomic analysis.

Authors:  Tarjei S Mikkelsen; Jacob Hanna; Xiaolan Zhang; Manching Ku; Marius Wernig; Patrick Schorderet; Bradley E Bernstein; Rudolf Jaenisch; Eric S Lander; Alexander Meissner
Journal:  Nature       Date:  2008-05-28       Impact factor: 49.962

3.  Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.

Authors:  Guangjin Pan; Shulan Tian; Jeff Nie; Chuhu Yang; Victor Ruotti; Hairong Wei; Gudrun A Jonsdottir; Ron Stewart; James A Thomson
Journal:  Cell Stem Cell       Date:  2007-09-13       Impact factor: 24.633

4.  Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency.

Authors:  Stormy J Chamberlain; Della Yee; Terry Magnuson
Journal:  Stem Cells       Date:  2008-04-10       Impact factor: 6.277

5.  An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity.

Authors:  Thomas G Fazzio; Jason T Huff; Barbara Panning
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

6.  Integration of external signaling pathways with the core transcriptional network in embryonic stem cells.

Authors:  Xi Chen; Han Xu; Ping Yuan; Fang Fang; Mikael Huss; Vinsensius B Vega; Eleanor Wong; Yuriy L Orlov; Weiwei Zhang; Jianming Jiang; Yuin-Han Loh; Hock Chuan Yeo; Zhen Xuan Yeo; Vipin Narang; Kunde Ramamoorthy Govindarajan; Bernard Leong; Atif Shahab; Yijun Ruan; Guillaume Bourque; Wing-Kin Sung; Neil D Clarke; Chia-Lin Wei; Huck-Hui Ng
Journal:  Cell       Date:  2008-06-13       Impact factor: 41.582

7.  GADD45A does not promote DNA demethylation.

Authors:  Seung-Gi Jin; Cai Guo; Gerd P Pfeifer
Journal:  PLoS Genet       Date:  2008-03-07       Impact factor: 5.917

8.  ES cell pluripotency and germ-layer formation require the SWI/SNF chromatin remodeling component BAF250a.

Authors:  Xiaolin Gao; Peri Tate; Ping Hu; Robert Tjian; William C Skarnes; Zhong Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-30       Impact factor: 11.205

9.  Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compounds.

Authors:  Danwei Huangfu; René Maehr; Wenjun Guo; Astrid Eijkelenboom; Melinda Snitow; Alice E Chen; Douglas A Melton
Journal:  Nat Biotechnol       Date:  2008-06-22       Impact factor: 54.908

10.  Selective blockade of microRNA processing by Lin28.

Authors:  Srinivas R Viswanathan; George Q Daley; Richard I Gregory
Journal:  Science       Date:  2008-02-21       Impact factor: 47.728

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  50 in total

Review 1.  Induced pluripotent stem cells in dermatology: potentials, advances, and limitations.

Authors:  Ganna Bilousova; Dennis R Roop
Journal:  Cold Spring Harb Perspect Med       Date:  2014-11-03       Impact factor: 6.915

2.  The distribution of genomic variations in human iPSCs is related to replication-timing reorganization during reprogramming.

Authors:  Junjie Lu; Hu Li; Ming Hu; Takayo Sasaki; Anna Baccei; David M Gilbert; Jun S Liu; James J Collins; Paul H Lerou
Journal:  Cell Rep       Date:  2014-03-27       Impact factor: 9.423

3.  End of inevitability: programming and reprogramming.

Authors:  Kursad Turksen
Journal:  Stem Cell Rev Rep       Date:  2013-08       Impact factor: 5.739

4.  Editorial 2014.

Authors:  Linda Partridge
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-12-02       Impact factor: 6.237

5.  Histone demethylase KDM2B inhibits the chondrogenic differentiation potentials of stem cells from apical papilla.

Authors:  Jing-Jing Wang; Rui Dong; Li-Ping Wang; Jin-Song Wang; Juan Du; Song-Lin Wang; Zhao-Chen Shan; Zhi-Peng Fan
Journal:  Int J Clin Exp Med       Date:  2015-02-15

6.  Causal Gene Regulatory Network Modeling and Genomics: Second-Generation Challenges.

Authors:  Ellen V Rothenberg
Journal:  J Comput Biol       Date:  2019-05-07       Impact factor: 1.479

7.  Mammalian epigenetics in biology and medicine.

Authors:  Fumitoshi Ishino; Yoichi Shinkai; Emma Whitelaw
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-05       Impact factor: 6.237

8.  Mathematical approaches to modeling development and reprogramming.

Authors:  Rob Morris; Ignacio Sancho-Martinez; Tatyana O Sharpee; Juan Carlos Izpisua Belmonte
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-20       Impact factor: 11.205

Review 9.  Regulatory factors of induced pluripotency: current status.

Authors:  Wei Zhao; Bo Ning; Chen Qian
Journal:  Stem Cell Investig       Date:  2014-07-22

10.  Neurons generated by direct conversion of fibroblasts reproduce synaptic phenotype caused by autism-associated neuroligin-3 mutation.

Authors:  Soham Chanda; Samuele Marro; Marius Wernig; Thomas C Südhof
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-17       Impact factor: 11.205

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