Literature DB >> 15864286

Genome coverage, literally speaking. The challenge of annotating 200 genomes with 4 million publications.

Paul Janssen1, Leon Goldovsky, Victor Kunin, Nikos Darzentas, Christos A Ouzounis.   

Abstract

Mesh：

Year:  2005        PMID： 15864286      PMCID： PMC1299317          DOI： 10.1038/sj.embor.7400412

Source DB:  PubMed          Journal:  EMBO Rep        ISSN： 1469-221X            Impact factor:   8.807


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  7 in total

1.  Genomes OnLine Database (GOLD): a monitor of genome projects world-wide.

Authors:  A Bernal; U Ear; N Kyrpides
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  Protein function in the post-genomic era.

Authors:  D Eisenberg; E M Marcotte; I Xenarios; T O Yeates
Journal:  Nature       Date:  2000-06-15       Impact factor: 49.962

Review 3.  The taxonomy of Streptomyces and related genera.

Authors:  A S Anderson; E M Wellington
Journal:  Int J Syst Evol Microbiol       Date:  2001-05       Impact factor: 2.747

4.  COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics.

Authors:  Paul Janssen; Anton J Enright; Benjamin Audit; Ildefonso Cases; Leon Goldovsky; Nicola Harte; Victor Kunin; Christos A Ouzounis
Journal:  Bioinformatics       Date:  2003-07-22       Impact factor: 6.937

Review 5.  The past, present and future of genome-wide re-annotation.

Authors:  Christos A Ouzounis; Peter D Karp
Journal:  Genome Biol       Date:  2002-01-31       Impact factor: 13.583

6.  Beyond 100 genomes.

Authors:  Paul Janssen; Benjamin Audit; Ildefonso Cases; Nikos Darzentas; Leon Goldovsky; Victor Kunin; Nuria Lopez-Bigas; José Manuel Peregrin-Alvarez; José B Pereira-Leal; Sophia Tsoka; Christos A Ouzounis
Journal:  Genome Biol       Date:  2003-04-28       Impact factor: 13.583

7.  Measuring genome conservation across taxa: divided strains and united kingdoms.

Authors:  Victor Kunin; Dag Ahren; Leon Goldovsky; Paul Janssen; Christos A Ouzounis
Journal:  Nucleic Acids Res       Date:  2005-01-28       Impact factor: 16.971
  7 in total
  19 in total

Review 1.  New metrics for comparative genomics.

Authors:  Michael Y Galperin; Eugene Kolker
Journal:  Curr Opin Biotechnol       Date:  2006-09-15       Impact factor: 9.740

Review 2.  The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli.

Authors:  Adam M Feist; Bernhard Ø Palsson
Journal:  Nat Biotechnol       Date:  2008-06       Impact factor: 54.908

3.  Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring.

Authors:  Christopher P Long; Jacqueline E Gonzalez; Adam M Feist; Bernhard O Palsson; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2017-09-23       Impact factor: 9.783

Review 4.  Systems biology perspectives on minimal and simpler cells.

Authors:  Joana C Xavier; Kiran Raosaheb Patil; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

5.  Optimizing genome-scale network reconstructions.

Authors:  Jonathan Monk; Juan Nogales; Bernhard O Palsson
Journal:  Nat Biotechnol       Date:  2014-05       Impact factor: 54.908

6.  FOCAL: an experimental design tool for systematizing metabolic discoveries and model development.

Authors:  Christopher J Tervo; Jennifer L Reed
Journal:  Genome Biol       Date:  2012-12-13       Impact factor: 13.583

7.  Metabolism of the fast-growing bacterium Vibrio natriegens elucidated by 13C metabolic flux analysis.

Authors:  Christopher P Long; Jacqueline E Gonzalez; Robert M Cipolla; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2017-10-16       Impact factor: 9.783

8.  FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology.

Authors:  Sandrine Grossetête; Bernard Labedan; Olivier Lespinet
Journal:  BMC Genomics       Date:  2010-02-01       Impact factor: 3.969

Review 9.  Reconstruction of biochemical networks in microorganisms.

Authors:  Adam M Feist; Markus J Herrgård; Ines Thiele; Jennie L Reed; Bernhard Ø Palsson
Journal:  Nat Rev Microbiol       Date:  2008-12-31       Impact factor: 60.633

10.  Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium.

Authors:  Ryan A LaCroix; Troy E Sandberg; Edward J O'Brien; Jose Utrilla; Ali Ebrahim; Gabriela I Guzman; Richard Szubin; Bernhard O Palsson; Adam M Feist
Journal:  Appl Environ Microbiol       Date:  2014-10-10       Impact factor: 4.792
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