Literature DB >> 12874064

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics.

Paul Janssen1, Anton J Enright, Benjamin Audit, Ildefonso Cases, Leon Goldovsky, Nicola Harte, Victor Kunin, Christos A Ouzounis.   

Abstract

SUMMARY: We present a database of fully sequenced and published genomes to facilitate the re-distribution of data and ensure reproducibility of results in the field of computational genomics. For its design we have implemented an extremely simple yet powerful schema to allow linking of genome sequence data to other resources. AVAILABILITY: http://maine.ebi.ac.uk:8000/services/cogent/

Mesh：

Year:  2003        PMID： 12874064     DOI： 10.1093/bioinformatics/btg161

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  26 in total

1.  Protein families and TRIBES in genome sequence space.

Authors:  Anton J Enright; Victor Kunin; Christos A Ouzounis
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

2.  Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function.

Authors:  James A Cotton; James O McInerney
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-17       Impact factor: 11.205

3.  Genome coverage, literally speaking. The challenge of annotating 200 genomes with 4 million publications.

Authors:  Paul Janssen; Leon Goldovsky; Victor Kunin; Nikos Darzentas; Christos A Ouzounis
Journal:  EMBO Rep       Date:  2005-05       Impact factor: 8.807

4.  The net of life: reconstructing the microbial phylogenetic network.

Authors:  Victor Kunin; Leon Goldovsky; Nikos Darzentas; Christos A Ouzounis
Journal:  Genome Res       Date:  2005-06-17       Impact factor: 9.043

5.  Lineage-specific partitions in archaeal transcription.

Authors:  Richard M R Coulson; Nathalie Touboul; Christos A Ouzounis
Journal:  Archaea       Date:  2007-05       Impact factor: 3.273

6.  The origins of apicomplexan sequence innovation.

Authors:  James Wasmuth; Jennifer Daub; José Manuel Peregrín-Alvarez; Constance A M Finney; John Parkinson
Journal:  Genome Res       Date:  2009-04-10       Impact factor: 9.043

7.  Comment on: "Desideratum for evidence-based epidemiology".

Authors:  Sean Hennessy; Charles E Leonard
Journal:  Drug Saf       Date:  2015-01       Impact factor: 5.606

8.  The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coat-like proteins.

Authors:  Rachel Santarella-Mellwig; Josef Franke; Andreas Jaedicke; Mátyás Gorjánácz; Ulrike Bauer; Aidan Budd; Iain W Mattaj; Damien P Devos
Journal:  PLoS Biol       Date:  2010-01-19       Impact factor: 8.029

9.  The Modular Organization of Protein Interactions in Escherichia coli.

Authors:  José M Peregrín-Alvarez; Xuejian Xiong; Chong Su; John Parkinson
Journal:  PLoS Comput Biol       Date:  2009-10-02       Impact factor: 4.475

10.  The conservation and evolutionary modularity of metabolism.

Authors:  José M Peregrín-Alvarez; Chris Sanford; John Parkinson
Journal:  Genome Biol       Date:  2009-06-12       Impact factor: 13.583
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.