Literature DB >> 15858263

Production and X-ray crystallographic analysis of fully deuterated cytochrome P450cam.

Flora Meilleur1, Marie Thérèse Dauvergne, Ilme Schlichting, Dean A A Myles.   

Abstract

Neutron protein crystallography allows H-atom positions to be located in biological structures at the relatively modest resolution of 1.5-2.0 A. A difficulty of this technique arises from the incoherent scattering from hydrogen, which considerably reduces the signal-to-noise ratio of the data. This can be overcome by preparing fully deuterated samples. Efficient protocols for routine and low-cost production of in vivo deuterium-enriched proteins have been developed. Here, the overexpression and crystallization of highly (>99%) deuterium-enriched cytochrome P450cam for neutron analysis is reported. Cytochrome P450cam from Pseudomonas putida catalyses the hydroxylation of camphor from haem-bound molecular O(2) via a mechanism that is thought to involve a proton-shuttle pathway to the active site. Since H atoms cannot be visualized in available X-ray structures, neutron diffraction is being used to determine the protonation states and water structure at the active site of the enzyme. Analysis of both hydrogenated and perdeuterated P450cam showed no significant changes between the X-ray structures determined at 1.4 and 1.7 A, respectively. This work demonstrates that the fully deuterated protein is highly isomorphous with the native (hydrogenated) protein and is appropriate for neutron protein crystallographic analysis.

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Year:  2005        PMID: 15858263     DOI: 10.1107/S0907444905003872

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  10 in total

1.  Comparison of hydrogen determination with X-ray and neutron crystallography in a human aldose reductase-inhibitor complex.

Authors:  M P Blakeley; A Mitschler; I Hazemann; F Meilleur; D A A Myles; A Podjarny
Journal:  Eur Biophys J       Date:  2006-04-19       Impact factor: 1.733

2.  High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K.

Authors:  Toshiyuki Chatake; Takuya Ishikawa; Yasuhide Yanagisawa; Taro Yamada; Ichiro Tanaka; Satoru Fujiwara; Yukio Morimoro
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-25

3.  X-ray structure of perdeuterated diisopropyl fluorophosphatase (DFPase): perdeuteration of proteins for neutron diffraction.

Authors:  Marc Michael Blum; Stephen J Tomanicek; Harald John; B Leif Hanson; Heinz Rüterjans; Benno P Schoenborn; Paul Langan; Julian C H Chen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-26

4.  Three clusters of conformational states in p450cam reveal a multistep pathway for closing of the substrate access channel.

Authors:  Young-Tae Lee; Edith C Glazer; Richard F Wilson; C David Stout; David B Goodin
Journal:  Biochemistry       Date:  2011-01-11       Impact factor: 3.162

Review 5.  Neutron Laue macromolecular crystallography.

Authors:  Flora Meilleur; Dean A A Myles; Matthew P Blakeley
Journal:  Eur Biophys J       Date:  2006-08-03       Impact factor: 1.733

6.  Optimizing crystal volume for neutron diffraction: D-xylose isomerase.

Authors:  Edward H Snell; Mark J van der Woerd; Michael Damon; Russell A Judge; Dean A A Myles; Flora Meilleur
Journal:  Eur Biophys J       Date:  2006-05-25       Impact factor: 1.733

Review 7.  Interfacial assembly of proteins and peptides: recent examples studied by neutron reflection.

Authors:  XiuBo Zhao; Fang Pan; Jian R Lu
Journal:  J R Soc Interface       Date:  2009-08-05       Impact factor: 4.118

8.  Production and X-ray crystallographic analysis of fully deuterated human carbonic anhydrase II.

Authors:  Monika Budayova-Spano; S Zoë Fisher; Marie Thérèse Dauvergne; Mavis Agbandje-McKenna; David N Silverman; Dean A A Myles; Robert McKenna
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-12-16

9.  Enhancing protein perdeuteration by experimental evolution of Escherichia coli K-12 for rapid growth in deuterium-based media.

Authors:  Vinardas Kelpšas; Claes von Wachenfeldt
Journal:  Protein Sci       Date:  2021-12       Impact factor: 6.725

10.  Substrate binding induces structural changes in cytochrome P450cam.

Authors:  Keisuke Sakurai; Hideo Shimada; Takashi Hayashi; Tomitake Tsukihara
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-01-31
  10 in total

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