Literature DB >> 15840910

Parameters affecting the X-ray dose absorbed by macromolecular crystals.

James W Murray1, Enrique Rudiño-Piñera, Robin Leslie Owen, Martin Grininger, Raimond B G Ravelli, Elspeth F Garman.   

Abstract

The lifetime of a macromolecular crystal in an X-ray beam is assumed to be limited by the absorbed dose. This dose, expressed in Gray (Gy = J kg(-1)), is a function of a number of parameters: the absorption coefficients of the constituent atoms of the crystal, the number of molecules per asymmetric unit, the beam energy, flux, size and profile, the crystal size, and the total irradiation time. The effects of these variables on the predicted absorbed dose, calculated using the program RADDOSE, are discussed and are illustrated with reference to the irradiation of a selenomethionine protein crystal of unknown structure. The results of RADDOSE can and will in the future be used to inform the data collection procedure as it sets a theoretical upper limit on the total exposure time at a certain X-ray source. However, as illustrated with an example for which the experimental data are compared with prediction, the actual lifetime of a crystal could become shorter in those cases where specific damage breaks down crucial crystal contacts.

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Year:  2005        PMID: 15840910     DOI: 10.1107/S0909049505003262

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  20 in total

1.  A fast selenium derivatization strategy for crystallization and phasing of RNA structures.

Authors:  Vincent Olieric; Ulrike Rieder; Kathrin Lang; Alexander Serganov; Clemens Schulze-Briese; Ronald Micura; Philippe Dumas; Eric Ennifar
Journal:  RNA       Date:  2009-02-18       Impact factor: 4.942

2.  Identification of patterns in diffraction intensities affected by radiation exposure.

Authors:  Dominika Borek; Zbigniew Dauter; Zbyszek Otwinowski
Journal:  J Synchrotron Radiat       Date:  2012-12-06       Impact factor: 2.616

3.  XANES measurements of the rate of radiation damage to selenomethionine side chains.

Authors:  James M Holton
Journal:  J Synchrotron Radiat       Date:  2006-12-15       Impact factor: 2.616

4.  Quantifying radiation damage in biomolecular small-angle X-ray scattering.

Authors:  Jesse B Hopkins; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2016-05-04       Impact factor: 3.304

5.  Structure and quantum chemical characterization of chloroperoxidase compound 0, a common reaction intermediate of diverse heme enzymes.

Authors:  Karin Kühnel; Etienne Derat; James Terner; Sason Shaik; Ilme Schlichting
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

6.  Estimate your dose: RADDOSE-3D.

Authors:  Charles S Bury; Jonathan C Brooks-Bartlett; Steven P Walsh; Elspeth F Garman
Journal:  Protein Sci       Date:  2017-11-06       Impact factor: 6.725

7.  Temperature-dependent macromolecular X-ray crystallography.

Authors:  Martin Weik; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Diffraction data analysis in the presence of radiation damage.

Authors:  Dominika Borek; Marcin Cymborowski; Mischa Machius; Wladek Minor; Zbyszek Otwinowski
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  The minimum crystal size needed for a complete diffraction data set.

Authors:  James M Holton; Kenneth A Frankel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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