Literature DB >> 15836428

Identification and characterization of photomedins: novel olfactomedin-domain-containing proteins with chondroitin sulphate-E-binding activity.

Yutaka Furutani1, Ri-ichiroh Manabe, Ko Tsutsui, Tomiko Yamada, Nagisa Sugimoto, Shiro Fukuda, Jun Kawai, Nobuo Sugiura, Koji Kimata, Yoshihide Hayashizaki, Kiyotoshi Sekiguchi.   

Abstract

We screened more than 60000 RIKEN mouse cDNAs for novel ECM (extracellular matrix) proteins by extensive computational screening followed by recombinant expression and immunohistochemical characterization. We identified two novel olfactomedin-family proteins characterized by the presence of tandem CXCXCX9C motifs in the N-terminal region, a coiled-coil domain and an olfactomedin domain in the C-terminal region. These proteins, named photomedin-1 and photomedin-2, were secreted as disulphide-bonded dimers (photomedin-1) or oligomers/multimers (photomedin-2) with O-linked carbohydrate chains, although photomedin-1 was proteolytically processed in the middle of the molecule after secretion. In the retina, photomedin-1 was selectively expressed in the outer segment of photoreceptor cells and photomedin-2 was expressed in all retinal neurons. Among a panel of ECM components, including glycosaminoglycans, photomedins preferentially bound to chondroitin sulphate-E and heparin. These results, together, indicate that photomedins are novel olfactomedin-domain-containing extracellular proteins capable of binding to proteoglycans containing these glycosaminoglycan chains.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15836428      PMCID: PMC1180717          DOI: 10.1042/BJ20050120

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  43 in total

Review 1.  Protein fusions to coiled-coil domains.

Authors:  K M Müller; K M Arndt; T Alber
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

2.  The secreted glycoprotein Noelin-1 promotes neurogenesis in Xenopus.

Authors:  T A Moreno; M Bronner-Fraser
Journal:  Dev Biol       Date:  2001-12-15       Impact factor: 3.582

Review 3.  alpha-Latrotoxin and its receptors: neurexins and CIRL/latrophilins.

Authors:  T C Südhof
Journal:  Annu Rev Neurosci       Date:  2001       Impact factor: 12.449

4.  Appican, the proteoglycan form of the amyloid precursor protein, contains chondroitin sulfate E in the repeating disaccharide region and 4-O-sulfated galactose in the linkage region.

Authors:  K Tsuchida; J Shioi; S Yamada; G Boghosian; A Wu; H Cai; K Sugahara; N K Robakis
Journal:  J Biol Chem       Date:  2001-07-30       Impact factor: 5.157

5.  Characterization of myocilin-myocilin interactions.

Authors:  M P Fautsch; D H Johnson
Journal:  Invest Ophthalmol Vis Sci       Date:  2001-09       Impact factor: 4.799

6.  Functional annotation of a full-length mouse cDNA collection.

Authors:  J Kawai; A Shinagawa; K Shibata; M Yoshino; M Itoh; Y Ishii; T Arakawa; A Hara; Y Fukunishi; H Konno; J Adachi; S Fukuda; K Aizawa; M Izawa; K Nishi; H Kiyosawa; S Kondo; I Yamanaka; T Saito; Y Okazaki; T Gojobori; H Bono; T Kasukawa; R Saito; K Kadota; H Matsuda; M Ashburner; S Batalov; T Casavant; W Fleischmann; T Gaasterland; C Gissi; B King; H Kochiwa; P Kuehl; S Lewis; Y Matsuo; I Nikaido; G Pesole; J Quackenbush; L M Schriml; F Staubli; R Suzuki; M Tomita; L Wagner; T Washio; K Sakai; T Okido; M Furuno; H Aono; R Baldarelli; G Barsh; J Blake; D Boffelli; N Bojunga; P Carninci; M F de Bonaldo; M J Brownstein; C Bult; C Fletcher; M Fujita; M Gariboldi; S Gustincich; D Hill; M Hofmann; D A Hume; M Kamiya; N H Lee; P Lyons; L Marchionni; J Mashima; J Mazzarelli; P Mombaerts; P Nordone; B Ring; M Ringwald; I Rodriguez; N Sakamoto; H Sasaki; K Sato; C Schönbach; T Seya; Y Shibata; K F Storch; H Suzuki; K Toyo-oka; K H Wang; C Weitz; C Whittaker; L Wilming; A Wynshaw-Boris; K Yoshida; Y Hasegawa; H Kawaji; S Kohtsuki; Y Hayashizaki
Journal:  Nature       Date:  2001-02-08       Impact factor: 49.962

7.  Optimedin: a novel olfactomedin-related protein that interacts with myocilin.

Authors:  Mario Torrado; Ritu Trivedi; Rina Zinovieva; Irina Karavanova; Stanislav I Tomarev
Journal:  Hum Mol Genet       Date:  2002-05-15       Impact factor: 6.150

8.  Characterization and differential expression of a human gene family of olfactomedin-related proteins.

Authors:  N H Kulkarni; C A Karavanich; W R Atchley; R R Anholt
Journal:  Genet Res       Date:  2000-08       Impact factor: 1.588

9.  Dorsalization of the neural tube by Xenopus tiarin, a novel patterning factor secreted by the flanking nonneural head ectoderm.

Authors:  Hiroshi Tsuda; Noriaki Sasai; Mami Matsuo-Takasaki; Makoto Sakuragi; Yoshinobu Murakami; Yoshiki Sasai
Journal:  Neuron       Date:  2002-02-14       Impact factor: 17.173

10.  Protein interactions with myocilin.

Authors:  Kelly Wentz-Hunter; Jun Ueda; Beatrice Y J T Yue
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-01       Impact factor: 4.799

View more
  22 in total

1.  Transcriptome-based systematic identification of extracellular matrix proteins.

Authors:  Ri-ichiroh Manabe; Ko Tsutsui; Tomiko Yamada; Mina Kimura; Itsuko Nakano; Chisei Shimono; Noriko Sanzen; Yutaka Furutani; Tomohiko Fukuda; Yasuko Oguri; Keiko Shimamoto; Daiji Kiyozumi; Yuya Sato; Yoshikazu Sado; Haruki Senoo; Shohei Yamashina; Shiro Fukuda; Jun Kawai; Nobuo Sugiura; Koji Kimata; Yoshihide Hayashizaki; Kiyotoshi Sekiguchi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-29       Impact factor: 11.205

2.  Olfactomedin-like 2 A and B (OLFML2A and OLFML2B) profile expression in the retina of spotted gar (Lepisosteus oculatus) and bioinformatics mining.

Authors:  María Lourdes Garza-Rodríguez; Rafael González-Álvarez; Roberto Eduardo Mendoza Alfaro; Diana Cristina Pérez-Ibave; Antonio Ali Perez-Maya; Maricela Luna-Muñoz; Karim Mohamed-Noriega; Carlos Arámburo-De-La-Hoz; Carlos Javier Aguilera González; Iram Pablo Rodriguez Sanchez
Journal:  Fish Physiol Biochem       Date:  2019-05-20       Impact factor: 2.794

3.  Optimedin induces expression of N-cadherin and stimulates aggregation of NGF-stimulated PC12 cells.

Authors:  Hee-Sheung Lee; Stanislav I Tomarev
Journal:  Exp Cell Res       Date:  2006-09-28       Impact factor: 3.905

4.  Structural basis for misfolding in myocilin-associated glaucoma.

Authors:  Rebecca K Donegan; Shannon E Hill; Dana M Freeman; Elaine Nguyen; Susan D Orwig; Katherine C Turnage; Raquel L Lieberman
Journal:  Hum Mol Genet       Date:  2014-12-18       Impact factor: 6.150

5.  Molecular architecture and modifications of full-length myocilin.

Authors:  Mackenzie D Martin; Dustin J E Huard; Ricardo C Guerrero-Ferreira; Ishani M Desai; Brett M Barlow; Raquel L Lieberman
Journal:  Exp Eye Res       Date:  2021-08-13       Impact factor: 3.770

6.  Functional role of proteolytic processing of recombinant myocilin in self-aggregation.

Authors:  José-Daniel Aroca-Aguilar; Francisco Martínez-Redondo; Francisco Sánchez-Sánchez; Miguel Coca-Prados; Julio Escribano
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-08-20       Impact factor: 4.799

7.  Olfactomedin-like 3 (OLFML3) gene expression in baboon and human ocular tissues: cornea, lens, uvea, and retina.

Authors:  I P Rodríguez-Sánchez; M L Garza-Rodríguez; K Mohamed-Noriega; V S Voruganti; M E Tejero; I Delgado-Enciso; D C Pérez-Ibave; N E Schlabritz-Loutsevitch; J Mohamed-Noriega; M L Martinez-Fierro; D Reséndez-Pérez; S A Cole; H Cavazos-Adame; A G Comuzzie; J Mohamed-Hamsho; H A Barrera-Saldaña
Journal:  J Med Primatol       Date:  2013-02-09       Impact factor: 0.667

Review 8.  Olfactomedin domain-containing proteins: possible mechanisms of action and functions in normal development and pathology.

Authors:  Stanislav I Tomarev; Naoki Nakaya
Journal:  Mol Neurobiol       Date:  2009-06-26       Impact factor: 5.590

9.  Biophysical characterization of the olfactomedin domain of myocilin, an extracellular matrix protein implicated in inherited forms of glaucoma.

Authors:  Susan D Orwig; Raquel L Lieberman
Journal:  PLoS One       Date:  2011-01-24       Impact factor: 3.240

10.  Aramchol downregulates stearoyl CoA-desaturase 1 in hepatic stellate cells to attenuate cellular fibrogenesis.

Authors:  Dipankar Bhattacharya; Brittany Basta; Jose M Mato; Amanda Craig; David Fernández-Ramos; Fernando Lopitz-Otsoa; Darya Tsvirkun; Liat Hayardeny; Vasuretha Chandar; Robert E Schwartz; Augusto Villanueva; Scott L Friedman
Journal:  JHEP Rep       Date:  2021-01-28
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.