Literature DB >> 31111317

Olfactomedin-like 2 A and B (OLFML2A and OLFML2B) profile expression in the retina of spotted gar (Lepisosteus oculatus) and bioinformatics mining.

María Lourdes Garza-Rodríguez1, Rafael González-Álvarez2, Roberto Eduardo Mendoza Alfaro3, Diana Cristina Pérez-Ibave1, Antonio Ali Perez-Maya4, Maricela Luna-Muñoz5, Karim Mohamed-Noriega6, Carlos Arámburo-De-La-Hoz5, Carlos Javier Aguilera González3, Iram Pablo Rodriguez Sanchez7.   

Abstract

Olfactomedin-like (OLFML) proteins are members of the olfactomedin domain-containing secreted glycoprotein (OLF) family. OLFML2A and OLFML2B are representative molecules of these glycoproteins. Olfactomedins are critical for the development and functional organization of the nervous system and retina, which is a highly conserved structure in vertebrates, having almost identical anatomical and physiological characteristics in multiple taxa. Spotted gar, a member of the Lepisosteidae family, is a freshwater fish that inhabits rivers, bayous, swamps, and brackish waters. Recently, the complete genome has been sequenced, providing a unique bridge between fish medical models to human biology, making it an excellent animal model. This study was aimed to understanding the evolution OLFML2A and OLFML2B in the retina of spotted gar through looking for the expression of these genes. Spotted gar retina was analyzed with hematoxylin-eosin staining assays to provide an overall view of the retina structure and an immunofluorescence assay to identify OLFML2A and OLFML2B protein expression. A phylogenetic tree was created using the neighbor-joining method. Forces that direct the evolution of the fish genes were tested. Spotted gar retina, as in other vertebrates, is made of several layers. OLFML2A and OLFML2B proteins were detected in the rod and cone photoreceptor layer (PRL), outer nuclear layer (ONL), and inner nuclear layer (INL). Phylogenetic tree analysis confirms the orthology within the OLFML2A gene. Purifying selection is the evolutionary force that directs the OLFML2A genes. OLFML2A genes have a well-conserved function over time and species.

Entities:  

Keywords:  Evolution; Expression profile; Eye; Olfactomedin; Retina; Spotted gar

Mesh:

Substances:

Year:  2019        PMID: 31111317     DOI: 10.1007/s10695-019-00647-0

Source DB:  PubMed          Journal:  Fish Physiol Biochem        ISSN: 0920-1742            Impact factor:   2.794


  30 in total

1.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

2.  Elucidation of subfamily segregation and intramolecular coevolution of the olfactomedin-like proteins by comprehensive phylogenetic analysis and gene expression pattern assessment.

Authors:  Ling-Chun Zeng; Ze-Guang Han; Wei-Jun Ma
Journal:  FEBS Lett       Date:  2005-09-23       Impact factor: 4.124

3.  Spotted Gar and the Evolution of Innate Immune Receptors.

Authors:  Dustin J Wcisel; Tatsuya Ota; Gary W Litman; Jeffrey A Yoder
Journal:  J Exp Zool B Mol Dev Evol       Date:  2017-05-24       Impact factor: 2.656

4.  Prevalence of mutations in TIGR/Myocilin in patients with adult and juvenile primary open-angle glaucoma.

Authors:  J L Wiggs; R R Allingham; D Vollrath; K H Jones; M De La Paz; J Kern; K Patterson; V L Babb; E A Del Bono; B W Broomer; M A Pericak-Vance; J L Haines
Journal:  Am J Hum Genet       Date:  1998-11       Impact factor: 11.025

5.  Molecular evolution of olfactomedin.

Authors:  C A Karavanich; R R Anholt
Journal:  Mol Biol Evol       Date:  1998-06       Impact factor: 16.240

6.  Olfactomedin 1 interacts with the Nogo A receptor complex to regulate axon growth.

Authors:  Naoki Nakaya; Afia Sultana; Hee-Sheung Lee; Stanislav I Tomarev
Journal:  J Biol Chem       Date:  2012-08-24       Impact factor: 5.157

7.  Olfactomedin-like 3 (OLFML3) gene expression in baboon and human ocular tissues: cornea, lens, uvea, and retina.

Authors:  I P Rodríguez-Sánchez; M L Garza-Rodríguez; K Mohamed-Noriega; V S Voruganti; M E Tejero; I Delgado-Enciso; D C Pérez-Ibave; N E Schlabritz-Loutsevitch; J Mohamed-Noriega; M L Martinez-Fierro; D Reséndez-Pérez; S A Cole; H Cavazos-Adame; A G Comuzzie; J Mohamed-Hamsho; H A Barrera-Saldaña
Journal:  J Med Primatol       Date:  2013-02-09       Impact factor: 0.667

Review 8.  Olfactomedin domain-containing proteins: possible mechanisms of action and functions in normal development and pathology.

Authors:  Stanislav I Tomarev; Naoki Nakaya
Journal:  Mol Neurobiol       Date:  2009-06-26       Impact factor: 5.590

9.  The EMBL-EBI bioinformatics web and programmatic tools framework.

Authors:  Weizhong Li; Andrew Cowley; Mahmut Uludag; Tamer Gur; Hamish McWilliam; Silvano Squizzato; Young Mi Park; Nicola Buso; Rodrigo Lopez
Journal:  Nucleic Acids Res       Date:  2015-04-06       Impact factor: 16.971

10.  The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

Authors:  Ingo Braasch; Andrew R Gehrke; Jeramiah J Smith; Kazuhiko Kawasaki; Tereza Manousaki; Jeremy Pasquier; Angel Amores; Thomas Desvignes; Peter Batzel; Julian Catchen; Aaron M Berlin; Michael S Campbell; Daniel Barrell; Kyle J Martin; John F Mulley; Vydianathan Ravi; Alison P Lee; Tetsuya Nakamura; Domitille Chalopin; Shaohua Fan; Dustin Wcisel; Cristian Cañestro; Jason Sydes; Felix E G Beaudry; Yi Sun; Jana Hertel; Michael J Beam; Mario Fasold; Mikio Ishiyama; Jeremy Johnson; Steffi Kehr; Marcia Lara; John H Letaw; Gary W Litman; Ronda T Litman; Masato Mikami; Tatsuya Ota; Nil Ratan Saha; Louise Williams; Peter F Stadler; Han Wang; John S Taylor; Quenton Fontenot; Allyse Ferrara; Stephen M J Searle; Bronwen Aken; Mark Yandell; Igor Schneider; Jeffrey A Yoder; Jean-Nicolas Volff; Axel Meyer; Chris T Amemiya; Byrappa Venkatesh; Peter W H Holland; Yann Guiguen; Julien Bobe; Neil H Shubin; Federica Di Palma; Jessica Alföldi; Kerstin Lindblad-Toh; John H Postlethwait
Journal:  Nat Genet       Date:  2016-03-07       Impact factor: 38.330

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