Literature DB >> 21360182

Car-Parrinello and path integral molecular dynamics study of the hydrogen bond in the acetic acid dimer in the gas phase.

Piotr Durlak1, Sławomir Berski, Zdzisław Latajka.   

Abstract

In the paper are described studies of the double proton transfer (DPT) processes in the cyclic dimer of acetic acid in the gas phase using Car-Parrinello (CPMD) and path integral molecular dynamics (PIMD). Structures, energies and proton trajectories have been determined. The results show the double proton transfer in 450 K. In the classical dynamics (CPMD) a clear process mechanism can be identified, where asynchronized DPT arises due to coupling between the O-H stretching oscillator and several low energy intermolecular vibrational modes. The DPT mechanism is also asynchronic when quantum tunneling has been allowed in the simulation. It has been found that the calculated values of barrier height for the proton transfer depends very strongly on the used approaches. Barrier received from the free-energy profile at the CPMD level is around 4.5 kcal mol(-1) whereas at the PIMD level is reduced to 1 kcal mol(-1). The nature of bonding in acetic acid dimer and rearrangement of electron density due to the proton movement has been also studied by the topological analysis of Electron Localization Function and Electron Localizability Indicator function.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21360182     DOI: 10.1007/s00894-011-1020-9

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  11 in total

1.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Coherent low-frequency motions of hydrogen bonded acetic acid dimers in the liquid phase.

Authors:  Karsten Heyne; Nils Huse; Jens Dreyer; Erik T J Nibbering; Thomas Elsaesser; Shaul Mukamel
Journal:  J Chem Phys       Date:  2004-07-08       Impact factor: 3.488

3.  Unified approach for molecular dynamics and density-functional theory.

Authors: 
Journal:  Phys Rev Lett       Date:  1985-11-25       Impact factor: 9.161

4.  A refined ring polymer molecular dynamics theory of chemical reaction rates.

Authors:  Ian R Craig; David E Manolopoulos
Journal:  J Chem Phys       Date:  2005-07-15       Impact factor: 3.488

5.  Car-Parrinello and path integral molecular dynamics study of the hydrogen bond in the chloroacetic acid dimer system.

Authors:  Piotr Durlak; Carole A Morrison; Derek S Middlemiss; Zdzislaw Latajka
Journal:  J Chem Phys       Date:  2007-08-14       Impact factor: 3.488

6.  Efficient pseudopotentials for plane-wave calculations.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1991-01-15

7.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

8.  Density-functional exchange-energy approximation with correct asymptotic behavior.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-09-15

9.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

Review 10.  Proton circuits in biological energy interconversions.

Authors:  R J Williams
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988
View more
  1 in total

1.  Acetic acid can catalyze succinimide formation from aspartic acid residues by a concerted bond reorganization mechanism: a computational study.

Authors:  Ohgi Takahashi; Ryota Kirikoshi; Noriyoshi Manabe
Journal:  Int J Mol Sci       Date:  2015-01-12       Impact factor: 5.923

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.