Literature DB >> 15824438

Stochasticity or the fatal 'imperfection' of cloning.

Reiner A Veitia1.   

Abstract

The concept of clone is analysed with the aim of exploring the limits to which a phenotype can be said to be determined geneticaly. First of all, mutations that result from the replication, topological manipulation or lesion of DNA introduce a source of heritable variation in an otherwise identical genetic background. But more important, stochastic effects in many biological processes may superimpose a phenotypic variation which is not encoded in the genome. The source of stochasticity ranges from the random selection of alleles or whole chromosomes to be expressed in small cell populations, to fluctuations in processes such as gene expression, due to limiting amounts of the players involved. The picture emerging is that the term clone is a statistical over-simplification representing a series of individuals having essentially the same genome but capable of exhibiting wide phenotypic variation. Finally, to what extent fluctuations in biological processes, usually thought of as noise, are in fact signal is also discussed.

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Year:  2005        PMID: 15824438     DOI: 10.1007/BF02705147

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   2.795


  47 in total

Review 1.  Monoallelic expression of Pax5: a paradigm for the haploinsufficiency of mammalian Pax genes?

Authors:  S L Nutt; M Busslinger
Journal:  Biol Chem       Date:  1999-06       Impact factor: 3.915

Review 2.  To be or not to be active: the stochastic nature of enhancer action.

Authors:  S Fiering; E Whitelaw; D I Martin
Journal:  Bioessays       Date:  2000-04       Impact factor: 4.345

3.  Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.

Authors:  A Becskei; B Séraphin; L Serrano
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

Review 4.  X chromosome inactivation, XIST, and pursuit of the X-inactivation center.

Authors:  H F Willard
Journal:  Cell       Date:  1996-07-12       Impact factor: 41.582

Review 5.  Systemic lupus erythematosus in childhood. Concordance in a pair of monozygotic twins for anti-dsDNA antibodies and discordance for disease expression.

Authors:  S Bustabad; T González; E Trujillo
Journal:  J Rheumatol       Date:  1997-07       Impact factor: 4.666

6.  Stochastic mechanisms in gene expression.

Authors:  H H McAdams; A Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-04       Impact factor: 11.205

7.  Position effect variegation at the mating-type locus of fission yeast: a cis-acting element inhibits covariegated expression of genes in the silent and expressed domains.

Authors:  N Ayoub; I Goldshmidt; A Cohen
Journal:  Genetics       Date:  1999-06       Impact factor: 4.562

Review 8.  Discordance for autoimmunity in monozygotic twins. Are "identical" twins really identical?

Authors:  P K Gregersen
Journal:  Arthritis Rheum       Date:  1993-09

Review 9.  MZ female twins discordant for X-linked diseases: a review.

Authors:  G Tiberio
Journal:  Acta Genet Med Gemellol (Roma)       Date:  1994

10.  Thresholds in development.

Authors:  J Lewis; J M Slack; L Wolpert
Journal:  J Theor Biol       Date:  1977-04-07       Impact factor: 2.691

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  6 in total

1.  Factors other than genotype account largely for the phenotypic variation of the pulmonary valve in Syrian hamsters.

Authors:  M Carmen Fernández; Ana C Durán; Borja Fernández; Josep M Arqué; Robert H Anderson; Valentín Sans-Coma
Journal:  J Anat       Date:  2012-05-17       Impact factor: 2.610

Review 2.  Stochastic developmental variation, an epigenetic source of phenotypic diversity with far-reaching biological consequences.

Authors:  Günter Vogt
Journal:  J Biosci       Date:  2015-03       Impact factor: 1.826

3.  Genetically alike Syrian hamsters display both bifoliate and trifoliate aortic valves.

Authors:  Valentín Sans-Coma; M Carmen Fernández; Borja Fernández; Ana C Durán; Robert H Anderson; Josep M Arqué
Journal:  J Anat       Date:  2011-10-30       Impact factor: 2.610

Review 4.  'Particle genetics': treating every cell as unique.

Authors:  Gaël Yvert
Journal:  Trends Genet       Date:  2013-12-06       Impact factor: 11.639

5.  pTcINDEX: a stable tetracycline-regulated expression vector for Trypanosoma cruzi.

Authors:  Martin C Taylor; John M Kelly
Journal:  BMC Biotechnol       Date:  2006-07-06       Impact factor: 2.563

6.  Isolating and quantifying the role of developmental noise in generating phenotypic variation.

Authors:  Maria Kiskowski; Tilmann Glimm; Nickolas Moreno; Tony Gamble; Ylenia Chiari
Journal:  PLoS Comput Biol       Date:  2019-04-22       Impact factor: 4.475

  6 in total

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