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Literature DB >> 15822105

Assessing precision and accuracy of protein structures derived from NMR data.

David A Snyder, Aneerban Bhattacharya, Yuanpeng J Huang, Gaetano T Montelione.

Abstract

Mesh：

Substances：
Proteins

Year: 2005 PMID： 15822105 DOI： 10.1002/prot.20499

Source DB: PubMed Journal: Proteins ISSN： 0887-3585

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Cited

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23 in total

1. Solution NMR structure of the ARID domain of human AT-rich interactive domain-containing protein 3A: a human cancer protein interaction network target.

Authors: Gaohua Liu; Yuanpeng J Huang; Rong Xiao; Dongyan Wang; Thomas B Acton; Gaetano T Montelione
Journal: Proteins Date: 2010-07

2. Protein structure validation by generalized linear model root-mean-square deviation prediction.

Authors: Anurag Bagaria; Victor Jaravine; Yuanpeng J Huang; Gaetano T Montelione; Peter Güntert
Journal: Protein Sci Date: 2012-01-04 Impact factor: 6.725

3. Accurate protein structure modeling using sparse NMR data and homologous structure information.

Authors: James M Thompson; Nikolaos G Sgourakis; Gaohua Liu; Paolo Rossi; Yuefeng Tang; Jeffrey L Mills; Thomas Szyperski; Gaetano T Montelione; David Baker
Journal: Proc Natl Acad Sci U S A Date: 2012-06-04 Impact factor: 11.205

Review 4. A community resource of experimental data for NMR / X-ray crystal structure pairs.

Authors: John K Everett; Roberto Tejero; Sarath B K Murthy; Thomas B Acton; James M Aramini; Michael C Baran; Jordi Benach; John R Cort; Alexander Eletsky; Farhad Forouhar; Rongjin Guan; Alexandre P Kuzin; Hsiau-Wei Lee; Gaohua Liu; Rajeswari Mani; Binchen Mao; Jeffrey L Mills; Alexander F Montelione; Kari Pederson; Robert Powers; Theresa Ramelot; Paolo Rossi; Jayaraman Seetharaman; David Snyder; G V T Swapna; Sergey M Vorobiev; Yibing Wu; Rong Xiao; Yunhuang Yang; Cheryl H Arrowsmith; John F Hunt; Michael A Kennedy; James H Prestegard; Thomas Szyperski; Liang Tong; Gaetano T Montelione
Journal: Protein Sci Date: 2015-09-22 Impact factor: 6.725

5. Definition of a new information-based per-residue quality parameter.

Authors: Sander B Nabuurs; Elmar Krieger; Chris A E M Spronk; Aart J Nederveen; Gert Vriend; Geerten W Vuister
Journal: J Biomol NMR Date: 2005-10 Impact factor: 2.835

6. Chemically accurate protein structures: validation of protein NMR structures by comparison of measured and predicted pKa values.

Authors: N Powers; Jan H Jensen
Journal: J Biomol NMR Date: 2006-06-03 Impact factor: 2.835

Assessing precision and accuracy of protein structures derived from NMR data.

1. Solution NMR structure of the ARID domain of human AT-rich interactive domain-containing protein 3A: a human cancer protein interaction network target.

2. Protein structure validation by generalized linear model root-mean-square deviation prediction.

3. Accurate protein structure modeling using sparse NMR data and homologous structure information.

Review 4. A community resource of experimental data for NMR / X-ray crystal structure pairs.

5. Definition of a new information-based per-residue quality parameter.

6. Chemically accurate protein structures: validation of protein NMR structures by comparison of measured and predicted pKa values.

7. Comparison of multiple crystal structures with NMR data for engrailed homeodomain.

8. Automated protein structure calculation from NMR data.

9. Protein flexibility: coordinate uncertainties and interpretation of structural differences.

10. Definition and classification of evaluation units for CASP10.