Literature DB >> 15812048

New tool for metabolic pathway engineering in Escherichia coli: one-step method to modulate expression of chromosomal genes.

Isabelle Meynial-Salles1, Marguerite A Cervin, Philippe Soucaille.   

Abstract

A simple and highly efficient method was developed to produce a library of Escherichia coli clones that express a particular chromosomal gene at a wide range of expression levels. The basic strategy was to replace all or part of the upstream region of a coding sequence containing the elements involved in its expression (promoter, operator, gene coding for a regulator, ribosome binding site, and start codon) with a PCR-generated library of expression cassettes.

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Year:  2005        PMID: 15812048      PMCID: PMC1082524          DOI: 10.1128/AEM.71.4.2140-2144.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  14 in total

Review 1.  Gene-expression tools for the metabolic engineering of bacteria.

Authors:  J D Keasling
Journal:  Trends Biotechnol       Date:  1999-11       Impact factor: 19.536

2.  Modulation of gene expression made easy.

Authors:  Christian Solem; Peter Ruhdal Jensen
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

3.  High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides.

Authors:  H M Ellis; D Yu; T DiTizio; D L Court
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-29       Impact factor: 11.205

4.  Translation initiation in Escherichia coli: sequences within the ribosome-binding site.

Authors:  S Ringquist; S Shinedling; D Barrick; L Green; J Binkley; G D Stormo; L Gold
Journal:  Mol Microbiol       Date:  1992-05       Impact factor: 3.501

5.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.

Authors:  K A Datsenko; B L Wanner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

6.  The sequence of spacers between the consensus sequences modulates the strength of prokaryotic promoters.

Authors:  P R Jensen; K Hammer
Journal:  Appl Environ Microbiol       Date:  1998-01       Impact factor: 4.792

7.  Glyceraldehyde phosphate dehydrogenase of Escherichia coli. Structural and catalytic properties.

Authors:  G D'Alessio; J Josse
Journal:  J Biol Chem       Date:  1971-07-10       Impact factor: 5.157

8.  Study of two-stage processes for the microbial production of 1,3-propanediol from glucose.

Authors:  M Hartlep; W Hussmann; N Prayitno; I Meynial-Salles; A-P Zeng
Journal:  Appl Microbiol Biotechnol       Date:  2002-08-29       Impact factor: 4.813

9.  The Escherichia coli gapA gene is transcribed by the vegetative RNA polymerase holoenzyme E sigma 70 and by the heat shock RNA polymerase E sigma 32.

Authors:  B Charpentier; C Branlant
Journal:  J Bacteriol       Date:  1994-02       Impact factor: 3.490

10.  Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant.

Authors:  P P Cherepanov; W Wackernagel
Journal:  Gene       Date:  1995-05-26       Impact factor: 3.688

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  14 in total

1.  proTeOn and proTeOff, new protein devices that inducibly activate bacterial gene expression.

Authors:  Katherine Volzing; Konstantinos Biliouris; Yiannis N Kaznessis
Journal:  ACS Chem Biol       Date:  2011-08-18       Impact factor: 5.100

2.  Coupling the CRISPR/Cas9 System with Lambda Red Recombineering Enables Simplified Chromosomal Gene Replacement in Escherichia coli.

Authors:  Michael E Pyne; Murray Moo-Young; Duane A Chung; C Perry Chou
Journal:  Appl Environ Microbiol       Date:  2015-05-22       Impact factor: 4.792

Review 3.  Application of the bacteriophage Mu-driven system for the integration/amplification of target genes in the chromosomes of engineered Gram-negative bacteria--mini review.

Authors:  Valerii Z Akhverdyan; Evgueni R Gak; Irina L Tokmakova; Nataliya V Stoynova; Yurgis A V Yomantas; Sergey V Mashko
Journal:  Appl Microbiol Biotechnol       Date:  2011-06-23       Impact factor: 4.813

4.  Optimization of synthetic operons using libraries of post-transcriptional regulatory elements.

Authors:  Daniel E Agnew; Brian F Pfleger
Journal:  Methods Mol Biol       Date:  2011

5.  Promoter knock-in: a novel rational method for the fine tuning of genes.

Authors:  Marjan De Mey; Jo Maertens; Sarah Boogmans; Wim K Soetaert; Erick J Vandamme; Raymond Cunin; Maria R Foulquié-Moreno
Journal:  BMC Biotechnol       Date:  2010-03-24       Impact factor: 2.563

Review 6.  Metabolic engineering for production of biorenewable fuels and chemicals: contributions of synthetic biology.

Authors:  Laura R Jarboe; Xueli Zhang; Xuan Wang; Jonathan C Moore; K T Shanmugam; Lonnie O Ingram
Journal:  J Biomed Biotechnol       Date:  2010-04-06

7.  Employment of a promoter-swapping technique shows that PhoU modulates the activity of the PstSCAB2 ABC transporter in Escherichia coli.

Authors:  Christopher D Rice; Jacob E Pollard; Zachery T Lewis; William R McCleary
Journal:  Appl Environ Microbiol       Date:  2008-12-01       Impact factor: 4.792

8.  Strain engineering by genome mass transfer: efficient chromosomal trait transfer method utilizing donor genomic DNA and recipient recombineering hosts.

Authors:  James A Williams; Jeremy Luke; Clague Hodgson
Journal:  Mol Biotechnol       Date:  2009-05-20       Impact factor: 2.695

9.  Dual-In/Out strategy for genes integration into bacterial chromosome: a novel approach to step-by-step construction of plasmid-less marker-less recombinant E. coli strains with predesigned genome structure.

Authors:  Natalia I Minaeva; Evgeny R Gak; Danila V Zimenkov; Aleksandra Yu Skorokhodova; Irina V Biryukova; Sergey V Mashko
Journal:  BMC Biotechnol       Date:  2008-08-12       Impact factor: 2.563

10.  Model-driven intracellular redox status modulation for increasing isobutanol production in Escherichia coli.

Authors:  Jiao Liu; Haishan Qi; Cheng Wang; Jianping Wen
Journal:  Biotechnol Biofuels       Date:  2015-08-01       Impact factor: 6.040

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