Literature DB >> 11976114

Modulation of gene expression made easy.

Christian Solem1, Peter Ruhdal Jensen.   

Abstract

A new approach for modulating gene expression, based on randomization of promoter (spacer) sequences, was developed. The method was applied to chromosomal genes in Lactococcus lactis and shown to generate libraries of clones with broad ranges of expression levels of target genes. In one example, overexpression was achieved by introducing an additional gene copy into a phage attachment site on the chromosome. This resulted in a series of strains with phosphofructokinase activities from 1.4 to 11 times the wild-type activity level. In this example, the pfk gene was cloned upstream of a gusA gene encoding beta-glucuronidase, resulting in an operon structure in which both genes are transcribed from a common promoter. We show that there is a linear correlation between the expressions of the two genes, which facilitates screening for mutants with suitable enzyme activities. In a second example, we show that the method can be applied to modulating the expression of native genes on the chromosome. We constructed a series of strains in which the expression of the las operon, containing the genes pfk, pyk, and ldh, was modulated by integrating a truncated copy of the pfk gene. Importantly, the modulation affected the activities of all three enzymes to the same extent, and enzyme activities ranging from 0.5 to 3.5 times the wild-type level were obtained.

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Year:  2002        PMID: 11976114      PMCID: PMC127566          DOI: 10.1128/AEM.68.5.2397-2403.2002

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  28 in total

1.  Twofold reduction of phosphofructokinase activity in Lactococcus lactis results in strong decreases in growth rate and in glycolytic flux.

Authors:  H W Andersen; C Solem; K Hammer; P R Jensen
Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

2.  Identification of the Minimal Replicon of Lactococcus lactis subsp. lactis UC317 Plasmid pCI305.

Authors:  F Hayes; C Daly; G F Fitzgerald
Journal:  Appl Environ Microbiol       Date:  1990-01       Impact factor: 4.792

3.  A linear steady-state treatment of enzymatic chains. General properties, control and effector strength.

Authors:  R Heinrich; T A Rapoport
Journal:  Eur J Biochem       Date:  1974-02-15

4.  Phosphofructokinase from Streptococcus lactis.

Authors:  A M Fordyce; C H Moore; G G Pritchard
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

5.  Lactate dehydrogenase has no control on lactate production but has a strong negative control on formate production in Lactococcus lactis.

Authors:  H W Andersen; M B Pedersen; K Hammer; P R Jensen
Journal:  Eur J Biochem       Date:  2001-12

6.  Fructose 1,6-diphosphate-activated L-lactate dehydrogenase from Streptococcus lactis: kinetic properties and factors affecting activation.

Authors:  V L Crow; G G Pritchard
Journal:  J Bacteriol       Date:  1977-07       Impact factor: 3.490

7.  Use of the Escherichia coli beta-glucuronidase (gusA) gene as a reporter gene for analyzing promoters in lactic acid bacteria.

Authors:  C Platteeuw; G Simons; W M de Vos
Journal:  Appl Environ Microbiol       Date:  1994-02       Impact factor: 4.792

8.  New tools for the physical and genetic mapping of Lactococcus strains.

Authors:  P Le Bourgeois; M Lautier; M Mata; P Ritzenthaler
Journal:  Gene       Date:  1992-02-01       Impact factor: 3.688

9.  Overproduction of glycolytic enzymes in yeast.

Authors:  I Schaaff; J Heinisch; F K Zimmermann
Journal:  Yeast       Date:  1989 Jul-Aug       Impact factor: 3.239

10.  Excess capacity of H(+)-ATPase and inverse respiratory control in Escherichia coli.

Authors:  P R Jensen; H V Westerhoff; O Michelsen
Journal:  EMBO J       Date:  1993-04       Impact factor: 11.598

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  33 in total

1.  Glyceraldehyde-3-phosphate dehydrogenase has no control over glycolytic flux in Lactococcus lactis MG1363.

Authors:  Christian Solem; Brian J Koebmann; Peter R Jensen
Journal:  J Bacteriol       Date:  2003-03       Impact factor: 3.490

2.  Expression of genes encoding F(1)-ATPase results in uncoupling of glycolysis from biomass production in Lactococcus lactis.

Authors:  Brian J Koebmann; Christian Solem; Martin B Pedersen; Dan Nilsson; Peter R Jensen
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

3.  New tool for metabolic pathway engineering in Escherichia coli: one-step method to modulate expression of chromosomal genes.

Authors:  Isabelle Meynial-Salles; Marguerite A Cervin; Philippe Soucaille
Journal:  Appl Environ Microbiol       Date:  2005-04       Impact factor: 4.792

4.  Identifying functionally important mutations from phenotypically diverse sequence data.

Authors:  Kyle Jensen; Hal Alper; Curt Fischer; Gregory Stephanopoulos
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

Review 5.  Plasmid engineering for controlled and sustained gene expression for nonviral gene therapy.

Authors:  Ethlinn V B van Gaal; Wim E Hennink; Daan J A Crommelin; Enrico Mastrobattista
Journal:  Pharm Res       Date:  2006-05-26       Impact factor: 4.200

6.  GAP promoter library for fine-tuning of gene expression in Pichia pastoris.

Authors:  Xiulin Qin; Jiangchao Qian; Gaofeng Yao; Yingping Zhuang; Siliang Zhang; Ju Chu
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

7.  The las enzymes control pyruvate metabolism in Lactococcus lactis during growth on maltose.

Authors:  Christian Solem; Brian Koebmann; Fen Yang; Peter R Jensen
Journal:  J Bacteriol       Date:  2007-07-06       Impact factor: 3.490

8.  Metabolic and transcriptional response to cofactor perturbations in Escherichia coli.

Authors:  Anders K Holm; Lars M Blank; Marco Oldiges; Andreas Schmid; Christian Solem; Peter R Jensen; Goutham N Vemuri
Journal:  J Biol Chem       Date:  2010-03-18       Impact factor: 5.157

9.  Key players in the genetic switch of bacteriophage TP901-1.

Authors:  Anne Alsing; Margit Pedersen; Kim Sneppen; Karin Hammer
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

10.  Promoter knock-in: a novel rational method for the fine tuning of genes.

Authors:  Marjan De Mey; Jo Maertens; Sarah Boogmans; Wim K Soetaert; Erick J Vandamme; Raymond Cunin; Maria R Foulquié-Moreno
Journal:  BMC Biotechnol       Date:  2010-03-24       Impact factor: 2.563

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