Literature DB >> 15798212

The SR protein SC35 is responsible for aberrant splicing of the E1alpha pyruvate dehydrogenase mRNA in a case of mental retardation with lactic acidosis.

Mathieu Gabut1, Manuèle Miné, Cécile Marsac, Michèle Brivet, Jamal Tazi, Johann Soret.   

Abstract

Pyruvate dehydrogenase (PDH) complex deficiency is a major cause of lactic acidosis and Leigh's encephalomyelopathies in infancy and childhood, resulting in early death in the majority of patients. Most of the molecular defects have been localized in the coding regions of the E1alpha PDH gene. Recently, we identified a novel mutation of the E1alpha PDH gene in a patient with an encephalopathy and lactic acidosis. This mutation, located downstream of exon 7, activates a cryptic splice donor and leads to the retention of intronic sequences. Here, we demonstrate that the mutation results in an increased binding of the SR protein SC35. Consistently, ectopic overexpression of this splicing factor enhanced the use of the cryptic splice site, whereas small interfering RNA-mediated reduction of the SC35 protein levels in primary fibroblasts from the patient resulted in the almost complete disappearance of the aberrantly spliced E1alpha PDH mRNA. Our findings open the exciting prospect for a novel therapy of an inherited disease by altering the level of a specific splicing factor.

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Year:  2005        PMID: 15798212      PMCID: PMC1069624          DOI: 10.1128/MCB.25.8.3286-3294.2005

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  43 in total

Review 1.  Listening to silence and understanding nonsense: exonic mutations that affect splicing.

Authors:  Luca Cartegni; Shern L Chew; Adrian R Krainer
Journal:  Nat Rev Genet       Date:  2002-04       Impact factor: 53.242

Review 2.  Pre-mRNA splicing and human disease.

Authors:  Nuno André Faustino; Thomas A Cooper
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

Review 3.  Control of alternative splicing by antisense oligonucleotides as a potential chemotherapy: effects on gene expression.

Authors:  Danielle R Mercatante; Ryszard Kole
Journal:  Biochim Biophys Acta       Date:  2002-07-18

4.  Correction of disease-associated exon skipping by synthetic exon-specific activators.

Authors:  Luca Cartegni; Adrian R Krainer
Journal:  Nat Struct Biol       Date:  2003-02

5.  Correction of alternative splicing of tau in frontotemporal dementia and parkinsonism linked to chromosome 17.

Authors:  B Kalbfuss; S A Mabon; T Misteli
Journal:  J Biol Chem       Date:  2001-09-17       Impact factor: 5.157

6.  Systemically delivered antisense oligomers upregulate gene expression in mouse tissues.

Authors:  Peter Sazani; Federica Gemignani; Shin-Hong Kang; Martin A Maier; Muthiah Manoharan; Magnus Persmark; Donna Bortner; Ryszard Kole
Journal:  Nat Biotechnol       Date:  2002-11-11       Impact factor: 54.908

7.  Exon identity established through differential antagonism between exonic splicing silencer-bound hnRNP A1 and enhancer-bound SR proteins.

Authors:  J Zhu; A Mayeda; A R Krainer
Journal:  Mol Cell       Date:  2001-12       Impact factor: 17.970

8.  A conserved Drosophila transportin-serine/arginine-rich (SR) protein permits nuclear import of Drosophila SR protein splicing factors and their antagonist repressor splicing factor 1.

Authors:  Eric Allemand; Svetlana Dokudovskaya; Rémy Bordonné; Jamal Tazi
Journal:  Mol Biol Cell       Date:  2002-07       Impact factor: 4.138

9.  Analysis of gene function in somatic mammalian cells using small interfering RNAs.

Authors:  Sayda M Elbashir; Jens Harborth; Klaus Weber; Thomas Tuschl
Journal:  Methods       Date:  2002-02       Impact factor: 3.608

Review 10.  Finding signals that regulate alternative splicing in the post-genomic era.

Authors:  Andrea N Ladd; Thomas A Cooper
Journal:  Genome Biol       Date:  2002-10-23       Impact factor: 13.583

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  23 in total

Review 1.  The RNAissance family: SR proteins as multifaceted regulators of gene expression.

Authors:  Jonathan M Howard; Jeremy R Sanford
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-08-22       Impact factor: 9.957

2.  A syn-anti conformational difference allows SRSF2 to recognize guanines and cytosines equally well.

Authors:  Gerrit M Daubner; Antoine Cléry; Sandrine Jayne; James Stevenin; Frédéric H-T Allain
Journal:  EMBO J       Date:  2011-10-14       Impact factor: 11.598

3.  Selective modification of alternative splicing by indole derivatives that target serine-arginine-rich protein splicing factors.

Authors:  Johann Soret; Nadia Bakkour; Sophie Maire; Sébastien Durand; Latifa Zekri; Mathieu Gabut; Weronika Fic; Gilles Divita; Christian Rivalle; Daniel Dauzonne; Chi Hung Nguyen; Philippe Jeanteur; Jamal Tazi
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-06       Impact factor: 11.205

4.  Splicing analysis disclosed a determinant single nucleotide for exon skipping caused by a novel intraexonic four-nucleotide deletion in the dystrophin gene.

Authors:  Van Khanh Tran; Yasuhiro Takeshima; Zhujun Zhang; Mariko Yagi; Atsushi Nishiyama; Yasuaki Habara; Masafumi Matsuo
Journal:  J Med Genet       Date:  2006-05-31       Impact factor: 6.318

5.  General and specific functions of exonic splicing silencers in splicing control.

Authors:  Zefeng Wang; Xinshu Xiao; Eric Van Nostrand; Christopher B Burge
Journal:  Mol Cell       Date:  2006-06-22       Impact factor: 17.970

6.  Multifactorial interplay controls the splicing profile of Alu-derived exons.

Authors:  Oren Ram; Schraga Schwartz; Gil Ast
Journal:  Mol Cell Biol       Date:  2008-03-10       Impact factor: 4.272

7.  Common variants in genes of the postsynaptic FMRP signalling pathway are risk factors for autism spectrum disorders.

Authors:  Regina Waltes; Eftichia Duketis; Michael Knapp; Richard J L Anney; Guillaume Huguet; Sabine Schlitt; Tomasz A Jarczok; Michael Sachse; Laura M Kämpfer; Tina Kleinböck; Fritz Poustka; Sven Bölte; Gabriele Schmötzer; Anette Voran; Ellen Huy; Jobst Meyer; Thomas Bourgeron; Sabine M Klauck; Christine M Freitag; Andreas G Chiocchetti
Journal:  Hum Genet       Date:  2014-01-19       Impact factor: 4.132

8.  SIRT1 undergoes alternative splicing in a novel auto-regulatory loop with p53.

Authors:  Cian J Lynch; Zahid H Shah; Simon J Allison; Shafiq U Ahmed; Jack Ford; Lorna J Warnock; Han Li; Manuel Serrano; Jo Milner
Journal:  PLoS One       Date:  2010-10-21       Impact factor: 3.240

9.  The exon 29 c.3535A>T in the alpha-2-macroglobulin gene causing aberrant splice variants is associated with mastitis in dairy cattle.

Authors:  Xiuge Wang; Jinming Huang; Lihong Zhao; Changfa Wang; Zhihua Ju; Qiuling Li; Chao Qi; Yan Zhang; Zebin Zhang; Wei Zhang; Minghai Hou; Jinduo Yuan; Jifeng Zhong
Journal:  Immunogenetics       Date:  2012-08-26       Impact factor: 2.846

10.  An unusual genetic variant in the MOCS1 gene leads to complete missplicing of an alternatively spliced exon in a patient with molybdenum cofactor deficiency.

Authors:  M Arenas; L D Fairbanks; K Vijayakumar; L Carr; E Escuredo; A M Marinaki
Journal:  J Inherit Metab Dis       Date:  2009-06-20       Impact factor: 4.982

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