Literature DB >> 15796980

Allophanate hydrolase of Oleomonas sagaranensis involved in an ATP-dependent degradation pathway specific to urea.

Takeshi Kanamori1, Norihisa Kanou, Shingo Kusakabe, Haruyuki Atomi, Tadayuki Imanaka.   

Abstract

The first prokaryotic urea carboxylase has previously been purified and characterized from Oleomonas sagaranensis. As the results indicated the presence of an ATP-dependent urea degradation pathway in Bacteria, the characterization of the second component of this pathway, allophanate hydrolase, was carried out. The gene encoding allophanate hydrolase was found adjacent to the urea carboxylase gene. The purified, recombinant enzyme exhibited ammonia-generating activity towards allophanate, and, together with urea carboxylase, efficiently produced ammonia from urea in an ATP-dependent manner. The substrate specificity of the enzyme was strict, and analogs of allophanate were not hydrolyzed. Moreover, although the urea carboxylase exhibited carboxylase activity towards urea, acetamide, and formamide, ammonia-releasing activity of the two enzymes combined was detected only towards urea, indicating that the pathway was specific for urea degradation.

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Year:  2005        PMID: 15796980     DOI: 10.1016/j.femsle.2005.02.023

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  18 in total

1.  X-ray structure of the amidase domain of AtzF, the allophanate hydrolase from the cyanuric acid-mineralizing multienzyme complex.

Authors:  Sahil Balotra; Janet Newman; Nathan P Cowieson; Nigel G French; Peter M Campbell; Lyndall J Briggs; Andrew C Warden; Christopher J Easton; Thomas S Peat; Colin Scott
Journal:  Appl Environ Microbiol       Date:  2014-10-31       Impact factor: 4.792

2.  Crystal structure of urea carboxylase provides insights into the carboxyltransfer reaction.

Authors:  Chen Fan; Chi-Yuan Chou; Liang Tong; Song Xiang
Journal:  J Biol Chem       Date:  2012-01-25       Impact factor: 5.157

3.  Allophanate hydrolase, not urease, functions in bacterial cyanuric acid metabolism.

Authors:  Gang Cheng; Nir Shapir; Michael J Sadowsky; Lawrence P Wackett
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

4.  Structure and function of allophanate hydrolase.

Authors:  Chen Fan; Zi Li; Huiyong Yin; Song Xiang
Journal:  J Biol Chem       Date:  2013-06-10       Impact factor: 5.157

5.  The urea carboxylase and allophanate hydrolase activities of urea amidolyase are functionally independent.

Authors:  Yi Lin; Cody J Boese; Martin St Maurice
Journal:  Protein Sci       Date:  2016-08-05       Impact factor: 6.725

6.  Single-particle analysis of urea amidolyase reveals its molecular mechanism.

Authors:  Ying Liu; Bin Yuan; Liang Peng; Jing Zhao; Bin Cheng; Yuhua Huang; Xinxing Zheng; Yuerong Zhou; Song Xiang; Li Zhu; Yi Wu
Journal:  Protein Sci       Date:  2020-03-10       Impact factor: 6.725

7.  Purification and characterization of TrzF: biuret hydrolysis by allophanate hydrolase supports growth.

Authors:  Nir Shapir; Gang Cheng; Michael J Sadowsky; Lawrence P Wackett
Journal:  Appl Environ Microbiol       Date:  2006-04       Impact factor: 4.792

8.  Degradation kinetics of 4-amino naphthalene-1-sulfonic acid by a biofilm-forming bacterial consortium under carbon and nitrogen limitations.

Authors:  C Juárez-Ramírez; R Velázquez-García; N Ruiz-Ordaz; J Galíndez-Mayer; O Ramos Monroy
Journal:  J Ind Microbiol Biotechnol       Date:  2012-04-11       Impact factor: 3.346

9.  The structure of allophanate hydrolase from Granulibacter bethesdensis provides insights into substrate specificity in the amidase signature family.

Authors:  Yi Lin; Martin St Maurice
Journal:  Biochemistry       Date:  2013-01-18       Impact factor: 3.162

10.  Comparison of the diversity of root-associated bacteria in Phragmites australis and Typha angustifolia L. in artificial wetlands.

Authors:  Yan Hong Li; Jing Nan Zhu; Qun Fang Liu; Yin Liu; Min Liu; Lei Liu; Qiang Zhang
Journal:  World J Microbiol Biotechnol       Date:  2013-03-16       Impact factor: 3.312

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