Literature DB >> 15775971

Crosslinking renders bacteriophage HK97 capsid maturation irreversible and effects an essential stabilization.

Philip D Ross1, Naiqian Cheng, James F Conway, Brian A Firek, Roger W Hendrix, Robert L Duda, Alasdair C Steven.   

Abstract

In HK97 capsid maturation, structural change ('expansion') is accompanied by formation of covalent crosslinks, connecting residue K169 in the 'E-loop' of each subunit with N356 on another subunit. We show by complementation experiments with the K169Y mutant, which cannot crosslink, that crosslinking is an essential function. The precursor Prohead-II passes through three expansion intermediate (EI) states en route to the end state, Head-II. We investigated the effects of expansion and crosslinking on stability by differential scanning calorimetry of wild-type and K169Y capsids. After expansion, the denaturation temperature (Tp) of K169Y capsids is slightly reduced, indicating that their thermal stability is not enhanced, but crosslinking effects a major stabilization (deltaTp, +11 degrees C). EI-II is the earliest capsid to form crosslinks. Cryo-electron microscopy shows that for both wild-type and K169Y EI-II, most E-loops are in the 'up' position, 30 A from the nearest N356: thus, crosslinking in EI-II represents capture of mobile E-loops in 'down' positions. At pH 4, most K169Y capsids remain as EI-II, whereas wild-type capsids proceed to EI-III, suggesting that crosslink formation drives maturation by a Brownian ratchet mechanism.

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Year:  2005        PMID: 15775971      PMCID: PMC1142538          DOI: 10.1038/sj.emboj.7600613

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  42 in total

1.  Virus maturation involving large subunit rotations and local refolding.

Authors:  J F Conway; W R Wikoff; N Cheng; R L Duda; R W Hendrix; J E Johnson; A C Steven
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Methods for reconstructing density maps of "single" particles from cryoelectron micrographs to subnanometer resolution.

Authors:  J F Conway; A C Steven
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

3.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

4.  Large conformational changes in the maturation of a simple RNA virus, nudaurelia capensis omega virus (NomegaV).

Authors:  M A Canady; M Tihova; T N Hanzlik; J E Johnson; M Yeager
Journal:  J Mol Biol       Date:  2000-06-09       Impact factor: 5.469

5.  Intermediates in the assembly pathway of the double-stranded RNA virus phi6.

Authors:  S J Butcher; T Dokland; P M Ojala; D H Bamford; S D Fuller
Journal:  EMBO J       Date:  1997-07-16       Impact factor: 11.598

6.  Conformational states of the bacteriophage P22 capsid subunit in relation to self-assembly.

Authors:  P E Prevelige; D Thomas; J King; S A Towse; G J Thomas
Journal:  Biochemistry       Date:  1990-06-12       Impact factor: 3.162

Review 7.  The making and breaking of symmetry in virus capsid assembly: glimpses of capsid biology from cryoelectron microscopy.

Authors:  A C Steven; B L Trus; F P Booy; N Cheng; A Zlotnick; J R Caston; J F Conway
Journal:  FASEB J       Date:  1997-08       Impact factor: 5.191

8.  Internal proteins of bacteriophage T7.

Authors:  P Serwer
Journal:  J Mol Biol       Date:  1976-11-05       Impact factor: 5.469

9.  The correlation averaging of a regularly arranged bacterial cell envelope protein.

Authors:  W O Saxton; W Baumeister
Journal:  J Microsc       Date:  1982-08       Impact factor: 1.758

10.  Proteolytic and conformational control of virus capsid maturation: the bacteriophage HK97 system.

Authors:  J F Conway; R L Duda; N Cheng; R W Hendrix; A C Steven
Journal:  J Mol Biol       Date:  1995-10-13       Impact factor: 5.469

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  28 in total

1.  Mechanics of bacteriophage maturation.

Authors:  Wouter H Roos; Ilya Gertsman; Eric R May; Charles L Brooks; John E Johnson; Gijs J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  Exploring the symmetry and mechanism of virus capsid maturation via an ensemble of pathways.

Authors:  Eric R May; Jun Feng; Charles L Brooks
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

3.  Transferrin-mediated targeting of bacteriophage HK97 nanoparticles into tumor cells.

Authors:  Rick K Huang; Nicole F Steinmetz; Chi-Yu Fu; Marianne Manchester; John E Johnson
Journal:  Nanomedicine (Lond)       Date:  2011-01       Impact factor: 5.307

4.  A free energy cascade with locks drives assembly and maturation of bacteriophage HK97 capsid.

Authors:  Philip D Ross; James F Conway; Naiqian Cheng; Lindsay Dierkes; Brian A Firek; Roger W Hendrix; Alasdair C Steven; Robert L Duda
Journal:  J Mol Biol       Date:  2006-08-22       Impact factor: 5.469

5.  Complete genomic sequence and mass spectrometric analysis of highly diverse, atypical Bacillus thuringiensis phage 0305phi8-36.

Authors:  Julie A Thomas; Stephen C Hardies; Mandy Rolando; Shirley J Hayes; Karen Lieman; Christopher A Carroll; Susan T Weintraub; Philip Serwer
Journal:  Virology       Date:  2007-07-30       Impact factor: 3.616

6.  Mutational analysis of a conserved glutamic acid required for self-catalyzed cross-linking of bacteriophage HK97 capsids.

Authors:  Lindsay E Dierkes; Craig L Peebles; Brian A Firek; Roger W Hendrix; Robert L Duda
Journal:  J Virol       Date:  2008-12-17       Impact factor: 5.103

7.  Stepwise expansion of the bacteriophage ϕ6 procapsid: possible packaging intermediates.

Authors:  Daniel Nemecek; Naiqian Cheng; Jian Qiao; Leonard Mindich; Alasdair C Steven; J Bernard Heymann
Journal:  J Mol Biol       Date:  2011-10-12       Impact factor: 5.469

8.  Flexible Connectors between Capsomer Subunits that Regulate Capsid Assembly.

Authors:  Mary L Hasek; Joshua B Maurer; Roger W Hendrix; Robert L Duda
Journal:  J Mol Biol       Date:  2017-07-10       Impact factor: 5.469

9.  Unfolding thermodynamics of the Delta-domain in the prohead I subunit of phage HK97: determination by factor analysis of Raman spectra.

Authors:  Daniel Nemecek; Stacy A Overman; Roger W Hendrix; George J Thomas
Journal:  J Mol Biol       Date:  2008-11-01       Impact factor: 5.469

10.  Architecture of a dsDNA viral capsid in complex with its maturation protease.

Authors:  David Veesler; Reza Khayat; Srinath Krishnamurthy; Joost Snijder; Rick K Huang; Albert J R Heck; Ganesh S Anand; John E Johnson
Journal:  Structure       Date:  2013-12-19       Impact factor: 5.006

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