Literature DB >> 17007875

A free energy cascade with locks drives assembly and maturation of bacteriophage HK97 capsid.

Philip D Ross1, James F Conway, Naiqian Cheng, Lindsay Dierkes, Brian A Firek, Roger W Hendrix, Alasdair C Steven, Robert L Duda.   

Abstract

We investigated the thermodynamic basis of HK97 assembly by scanning calorimetry and cryo-electron microscopy. This pathway involves self-assembly of hexamers and pentamers of the precursor capsid protein gp5 into procapsids; proteolysis of their N-terminal Delta-domains; expansion, a major conformational change; and covalent crosslinking. The thermal denaturation parameters convey the changes in stability at successive steps in assembly, and afford estimates of the corresponding changes in free energy. The procapsid represents a kinetically accessible local minimum of free energy. In maturation, it progresses to lower minima in a cascade punctuated by irreversible processes ("locks"), i.e. proteolysis and crosslinking, that lower kinetic barriers and prevent regression. We infer that Delta-domains not only guide assembly but also restrain the procapsid from premature expansion; their removal by proteolysis is conducive to initiating expansion and to its proceeding to completion. We also analyzed the mutant E219K, whose capsomers reassemble in vitro into procapsids with vacant vertices called "whiffleballs". E219K assemblies all have markedly reduced stability compared to wild-type gp5 (DeltaT(p) approximately -7 degrees C to -10 degrees C; where T(p) is the denaturation temperature). As the mutated residue is buried in the core of gp5, we attribute the observed reduction in stability to steric and electrostatic perturbations of the packing of side-chains in the subunit interior. To explain the whiffleball phenotype, we suggest that these effects propagate to the capsomer periphery in such a way as to differentially affect the stability or solubility of dissociated pentamers, leaving only hexamers to reassemble.

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Year:  2006        PMID: 17007875      PMCID: PMC1941702          DOI: 10.1016/j.jmb.2006.08.048

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  42 in total

1.  Methods for reconstructing density maps of "single" particles from cryoelectron micrographs to subnanometer resolution.

Authors:  J F Conway; A C Steven
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  The maturation-dependent conformational change of phage T4 capsid involves the translocation of specific epitopes between the inner and the outer capsid surfaces.

Authors:  A C Steven; A C Bauer; M E Bisher; F A Robey; L W Black
Journal:  J Struct Biol       Date:  1991-06       Impact factor: 2.867

3.  Structure of simian virus 40 at 3.8-A resolution.

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Journal:  Nature       Date:  1991-11-28       Impact factor: 49.962

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Journal:  Biopolymers       Date:  1987-11       Impact factor: 2.505

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Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

6.  Conformational transformations in the protein lattice of phage P22 procapsids.

Authors:  M L Galisteo; J King
Journal:  Biophys J       Date:  1993-07       Impact factor: 4.033

7.  Assembly-dependent conformational changes in a viral capsid protein. Calorimetric comparison of successive conformational states of the gp23 surface lattice of bacteriophage T4.

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Journal:  J Mol Biol       Date:  1985-06-05       Impact factor: 5.469

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Journal:  J Microsc       Date:  1982-08       Impact factor: 1.758

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Journal:  J Mol Biol       Date:  1992-12-05       Impact factor: 5.469

10.  Structural transitions during bacteriophage HK97 head assembly.

Authors:  R L Duda; J Hempel; H Michel; J Shabanowitz; D Hunt; R W Hendrix
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

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  24 in total

1.  The Prohead-I structure of bacteriophage HK97: implications for scaffold-mediated control of particle assembly and maturation.

Authors:  Rick K Huang; Reza Khayat; Kelly K Lee; Ilya Gertsman; Robert L Duda; Roger W Hendrix; John E Johnson
Journal:  J Mol Biol       Date:  2011-01-27       Impact factor: 5.469

2.  Exploring the symmetry and mechanism of virus capsid maturation via an ensemble of pathways.

Authors:  Eric R May; Jun Feng; Charles L Brooks
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

3.  Differential assembly of Hepatitis B Virus core protein on single- and double-stranded nucleic acid suggest the dsDNA-filled core is spring-loaded.

Authors:  Mary S Dhason; Joseph C-Y Wang; Michael F Hagan; Adam Zlotnick
Journal:  Virology       Date:  2012-05-16       Impact factor: 3.616

4.  Distinguishing reversible from irreversible virus capsid assembly.

Authors:  Adam Zlotnick
Journal:  J Mol Biol       Date:  2006-11-11       Impact factor: 5.469

5.  Mutational analysis of a conserved glutamic acid required for self-catalyzed cross-linking of bacteriophage HK97 capsids.

Authors:  Lindsay E Dierkes; Craig L Peebles; Brian A Firek; Roger W Hendrix; Robert L Duda
Journal:  J Virol       Date:  2008-12-17       Impact factor: 5.103

6.  Flexible Connectors between Capsomer Subunits that Regulate Capsid Assembly.

Authors:  Mary L Hasek; Joshua B Maurer; Roger W Hendrix; Robert L Duda
Journal:  J Mol Biol       Date:  2017-07-10       Impact factor: 5.469

7.  The role of capsid maturation on adenovirus priming for sequential uncoating.

Authors:  Ana J Pérez-Berná; Alvaro Ortega-Esteban; Rosa Menéndez-Conejero; Dennis C Winkler; Margarita Menéndez; Alasdair C Steven; S Jane Flint; Pedro J de Pablo; Carmen San Martín
Journal:  J Biol Chem       Date:  2012-07-12       Impact factor: 5.157

8.  Unfolding thermodynamics of the Delta-domain in the prohead I subunit of phage HK97: determination by factor analysis of Raman spectra.

Authors:  Daniel Nemecek; Stacy A Overman; Roger W Hendrix; George J Thomas
Journal:  J Mol Biol       Date:  2008-11-01       Impact factor: 5.469

9.  The thermodynamics of virus capsid assembly.

Authors:  Sarah Katen; Adam Zlotnick
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

10.  High-resolution mass spectrometry of viral assemblies: molecular composition and stability of dimorphic hepatitis B virus capsids.

Authors:  Charlotte Uetrecht; Cees Versluis; Norman R Watts; Wouter H Roos; Gijs J L Wuite; Paul T Wingfield; Alasdair C Steven; Albert J R Heck
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-27       Impact factor: 11.205

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