Literature DB >> 16964533

Towards unambiguous assignment of methyl-containing residues by double and triple sensitivity-enhanced HCCmHm-TOCSY experiments.

Peter Würtz1, Maarit Hellman, Helena Tossavainen, Perttu Permi.   

Abstract

Chemical shift assignment of methyl-containing residues is essential in protein NMR spectroscopy, as these residues are abundant in protein interiors and provide the vast majority of long-range NOE connectivities for structure determination. These residues also constitute an integral part of hydrophobic cavities, the surroundings for many enzymatic reactions. Here we present a powerful strategy for the assignment of methyl-containing residues in a uniformly 13C/15N double labeled protein sample. The approach is based on novel four-dimensional HCCmHm-TOCSY experiments, two of them utilizing gradient selection and sensitivity enhancement in all three indirectly detected dimensions. Regardless of the number of dimensions, the proposed experiments can be executed using only one transient per FID, providing outstanding resolution and sensitivity. A complete assignment of the 51 methyl-containing residues in the 16 kDa Mus musculus coactosin was accomplished using a four-dimensional HCCmHm-TOCSY spectrum recorded in 16 hours.

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Year:  2006        PMID: 16964533     DOI: 10.1007/s10858-006-9056-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  20 in total

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Authors:  G A Mueller; W Y Choy; D Yang; J D Forman-Kay; R A Venters; L E Kay
Journal:  J Mol Biol       Date:  2000-06-30       Impact factor: 5.469

2.  Efficient side-chain and backbone assignment in large proteins: application to tGCN5.

Authors:  Y Lin; G Wagner
Journal:  J Biomol NMR       Date:  1999-11       Impact factor: 2.835

3.  Ile, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

4.  Gradient- and sensitivity-enhanced TOCSY experiments.

Authors:  K E Kövér; D Uhrín; V J Hruby
Journal:  J Magn Reson       Date:  1998-02       Impact factor: 2.229

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

7.  Line narrowing in methyl-TROSY using zero-quantum 1H-13C NMR spectroscopy.

Authors:  Vitali Tugarinov; Remco Sprangers; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2004-04-21       Impact factor: 15.419

8.  Solution structure of coactosin reveals structural homology to ADF/cofilin family proteins.

Authors:  Maarit Hellman; Ville O Paavilainen; Perttu Naumanen; Pekka Lappalainen; Arto Annila; Perttu Permi
Journal:  FEBS Lett       Date:  2004-10-08       Impact factor: 4.124

9.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

10.  A general method for assigning NMR spectra of denatured proteins using 3D HC(CO)NH-TOCSY triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

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  5 in total

1.  Structure of decorin binding protein B from Borrelia burgdorferi and its interactions with glycosaminoglycans.

Authors:  Wei Feng; Xu Wang
Journal:  Biochim Biophys Acta       Date:  2015-08-11

2.  Protein-ligand structure guided by backbone and side-chain proton chemical shift perturbations.

Authors:  Clémentine Aguirre; Tim ten Brink; Olivier Cala; Jean-François Guichou; Isabelle Krimm
Journal:  J Biomol NMR       Date:  2014-09-26       Impact factor: 2.835

3.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

Review 4.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

5.  Chimeric Avidin--NMR structure and dynamics of a 56 kDa homotetrameric thermostable protein.

Authors:  Helena Tossavainen; Sampo Kukkurainen; Juha A E Määttä; Niklas Kähkönen; Tero Pihlajamaa; Vesa P Hytönen; Markku S Kulomaa; Perttu Permi
Journal:  PLoS One       Date:  2014-06-24       Impact factor: 3.240

  5 in total

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