Literature DB >> 15748908

Temperature compensation in circadian clock models.

Gen Kurosawa1, Yoh Iwasa.   

Abstract

Circadian clock of organisms has a free-running period that does not change much with ambient temperature. This property "temperature compensation" is studied when the rate of all reaction steps increase with temperature in the biochemical network generating the rhythm. The period becomes shorter when all the rate parameters are enhanced by the same factor. However, the period becomes longer as degradation rate of proteins and/or transcription rate of the clock gene increase (their elasticity is positive). This holds for a wide range of models, including N-variable model, and PER-TIM double oscillator model, provided that (1) branch reactions (e.g. degradation of proteins or mRNAs) are strongly saturated, and that (2) the cooperativity of transcription inhibition by nuclear proteins is not very large. A strong temperature sensitivity of degradation of PER proteins and/or temperature-sensitive alternative splicing of per gene, known for Drosophila, can be mechanisms for the temperature compensation of circadian clock.

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Year:  2004        PMID: 15748908     DOI: 10.1016/j.jtbi.2004.10.012

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  19 in total

1.  A proposal for robust temperature compensation of circadian rhythms.

Authors:  Christian I Hong; Emery D Conrad; John J Tyson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-17       Impact factor: 11.205

2.  Semi-algebraic optimization of temperature compensation in a general switch-type negative feedback model of circadian clocks.

Authors:  Sven Ole Aase; Peter Ruoff
Journal:  J Math Biol       Date:  2007-08-18       Impact factor: 2.259

3.  Biological switches and clocks.

Authors:  John J Tyson; Reka Albert; Albert Goldbeter; Peter Ruoff; Jill Sible
Journal:  J R Soc Interface       Date:  2008-08-06       Impact factor: 4.118

4.  Generic temperature compensation of biological clocks by autonomous regulation of catalyst concentration.

Authors:  Tetsuhiro S Hatakeyama; Kunihiko Kaneko
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-07       Impact factor: 11.205

5.  Non-sinusoidal Waveform in Temperature-Compensated Circadian Oscillations.

Authors:  Shingo Gibo; Gen Kurosawa
Journal:  Biophys J       Date:  2019-01-15       Impact factor: 4.033

6.  The relationship between FRQ-protein stability and temperature compensation in the Neurospora circadian clock.

Authors:  Peter Ruoff; Jennifer J Loros; Jay C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-28       Impact factor: 11.205

7.  Circadian gene expression is resilient to large fluctuations in overall transcription rates.

Authors:  Charna Dibner; Daniel Sage; Michael Unser; Christoph Bauer; Thomas d'Eysmond; Felix Naef; Ueli Schibler
Journal:  EMBO J       Date:  2008-12-11       Impact factor: 11.598

8.  Temperature compensation and temperature sensation in the circadian clock.

Authors:  Philip B Kidd; Michael W Young; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

9.  A role for casein kinase 2 in the mechanism underlying circadian temperature compensation.

Authors:  Arun Mehra; Mi Shi; Christopher L Baker; Hildur V Colot; Jennifer J Loros; Jay C Dunlap
Journal:  Cell       Date:  2009-05-15       Impact factor: 41.582

10.  Simulating dark expressions and interactions of frq and wc-1 in the Neurospora circadian clock.

Authors:  Christian I Hong; Ingunn W Jolma; Jennifer J Loros; Jay C Dunlap; Peter Ruoff
Journal:  Biophys J       Date:  2007-10-26       Impact factor: 4.033

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