Literature DB >> 17229851

A proposal for robust temperature compensation of circadian rhythms.

Christian I Hong1, Emery D Conrad, John J Tyson.   

Abstract

The internal circadian rhythms of cells and organisms coordinate their physiological properties to the prevailing 24-h cycle of light and dark on earth. The mechanisms generating circadian rhythms have four defining characteristics: they oscillate endogenously with period close to 24 h, entrain to external signals, suffer phase shifts by aberrant pulses of light or temperature, and compensate for changes in temperature over a range of 10 degrees C or more. Most theoretical descriptions of circadian rhythms propose that the underlying mechanism generates a stable limit cycle oscillation (in constant darkness or dim light), because limit cycles quite naturally possess the first three defining properties of circadian rhythms. On the other hand, the period of a limit cycle oscillator is typically very sensitive to kinetic rate constants, which increase markedly with temperature. Temperature compensation is therefore not a general property of limit cycle oscillations but must be imposed by some delicate balance of temperature dependent effects. However, "delicate balances" are unlikely to be robust to mutations. On the other hand, if circadian rhythms arise from a mechanism that concentrates sensitivity into a few rate constants, then the "balancing act" is likely to be more robust and evolvable. We propose a switch-like mechanism for circadian rhythms that concentrates period sensitivity in just two parameters, by forcing the system to alternate between a stable steady state and a stable limit cycle.

Mesh:

Year:  2007        PMID: 17229851      PMCID: PMC1773060          DOI: 10.1073/pnas.0601378104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

Review 1.  Molecular bases for circadian clocks.

Authors:  J C Dunlap
Journal:  Cell       Date:  1999-01-22       Impact factor: 41.582

2.  Molecular and behavioral analysis of four period mutants in Drosophila melanogaster encompassing extreme short, novel long, and unorthodox arrhythmic types.

Authors:  M J Hamblen; N E White; P T Emery; K Kaiser; J C Hall
Journal:  Genetics       Date:  1998-05       Impact factor: 4.562

Review 3.  Modeling temperature compensation in chemical and biological oscillators.

Authors:  P Ruoff; L Rensing; R Kommedal; S Mohsenzadeh
Journal:  Chronobiol Int       Date:  1997-09       Impact factor: 2.877

4.  A model for circadian rhythms in Drosophila incorporating the formation of a complex between the PER and TIM proteins.

Authors:  J C Leloup; A Goldbeter
Journal:  J Biol Rhythms       Date:  1998-02       Impact factor: 3.182

Review 5.  Temperature compensation of circadian rhythms: control of the period in a model for circadian oscillations of the per protein in Drosophila.

Authors:  J C Leloup; A Goldbeter
Journal:  Chronobiol Int       Date:  1997-09       Impact factor: 2.877

Review 6.  A model for circadian oscillations in the Drosophila period protein (PER).

Authors:  A Goldbeter
Journal:  Proc Biol Sci       Date:  1995-09-22       Impact factor: 5.349

7.  Temporally regulated nuclear entry of the Drosophila period protein contributes to the circadian clock.

Authors:  K D Curtin; Z J Huang; M Rosbash
Journal:  Neuron       Date:  1995-02       Impact factor: 17.173

8.  timrit Lengthens circadian period in a temperature-dependent manner through suppression of PERIOD protein cycling and nuclear localization.

Authors:  A Matsumoto; K Tomioka; Y Chiba; T Tanimura
Journal:  Mol Cell Biol       Date:  1999-06       Impact factor: 4.272

9.  double-time is a novel Drosophila clock gene that regulates PERIOD protein accumulation.

Authors:  J L Price; J Blau; A Rothenfluh; M Abodeely; B Kloss; M W Young
Journal:  Cell       Date:  1998-07-10       Impact factor: 41.582

10.  The Drosophila clock gene double-time encodes a protein closely related to human casein kinase Iepsilon.

Authors:  B Kloss; J L Price; L Saez; J Blau; A Rothenfluh; C S Wesley; M W Young
Journal:  Cell       Date:  1998-07-10       Impact factor: 41.582

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  30 in total

1.  Using chemistry and microfluidics to understand the spatial dynamics of complex biological networks.

Authors:  Christian J Kastrup; Matthew K Runyon; Elena M Lucchetta; Jessica M Price; Rustem F Ismagilov
Journal:  Acc Chem Res       Date:  2008-01-25       Impact factor: 22.384

2.  Semi-algebraic optimization of temperature compensation in a general switch-type negative feedback model of circadian clocks.

Authors:  Sven Ole Aase; Peter Ruoff
Journal:  J Math Biol       Date:  2007-08-18       Impact factor: 2.259

3.  Biological switches and clocks.

Authors:  John J Tyson; Reka Albert; Albert Goldbeter; Peter Ruoff; Jill Sible
Journal:  J R Soc Interface       Date:  2008-08-06       Impact factor: 4.118

4.  Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus.

Authors:  Christian I Hong; Peter Ruoff; Jennifer J Loros; Jay C Dunlap
Journal:  Genes Dev       Date:  2008-11-07       Impact factor: 11.361

5.  Generic temperature compensation of biological clocks by autonomous regulation of catalyst concentration.

Authors:  Tetsuhiro S Hatakeyama; Kunihiko Kaneko
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-07       Impact factor: 11.205

6.  Molecular characterization of the transition to mid-life in Caenorhabditis elegans.

Authors:  D Mark Eckley; Salim Rahimi; Sandra Mantilla; Nikita V Orlov; Christopher E Coletta; Mark A Wilson; Wendy B Iser; John D Delaney; Yongqing Zhang; William Wood; Kevin G Becker; Catherine A Wolkow; Ilya G Goldberg
Journal:  Age (Dordr)       Date:  2012-05-20

7.  The effects of time-varying temperature on delays in genetic networks.

Authors:  Marcella M Gomez; Richard M Murray; Matthew R Bennett
Journal:  SIAM J Appl Dyn Syst       Date:  2016-09-15       Impact factor: 2.316

8.  The control of the controller: molecular mechanisms for robust perfect adaptation and temperature compensation.

Authors:  Xiao Yu Ni; Tormod Drengstig; Peter Ruoff
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

9.  Temperature compensation and temperature sensation in the circadian clock.

Authors:  Philip B Kidd; Michael W Young; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

10.  Minimum criteria for DNA damage-induced phase advances in circadian rhythms.

Authors:  Christian I Hong; Judit Zámborszky; Attila Csikász-Nagy
Journal:  PLoS Comput Biol       Date:  2009-05-08       Impact factor: 4.475

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