Literature DB >> 15728392

Time-resolved electrometric and optical studies on cytochrome bd suggest a mechanism of electron-proton coupling in the di-heme active site.

Ilya Belevich1, Vitaliy B Borisov, Jie Zhang, Ke Yang, Alexander A Konstantinov, Robert B Gennis, Michael I Verkhovsky.   

Abstract

Time-resolved electron transfer and electrogenic H(+) translocation have been compared in a bd-type quinol oxidase from Escherichia coli and its E445A mutant. The high-spin heme b(595) is found to be retained by the enzyme in contrast to the original proposal, but it is not reducible even by excess of dithionite. When preincubated with the reductants, both the WT (b(558)(2+), b(595)(2+), d(2+)) and E445A mutant oxidase (b(558)(2+), b(595)(3+), d(2+)) bind O(2) rapidly, but formation of the oxoferryl state in the mutant is approximately 100-fold slower than in the WT enzyme. At the same time, the E445A substitution does not affect intraprotein electron re-equilibration after the photolysis of CO bound to ferrous heme d in the one-electron-reduced enzyme (the so-called "electron backflow"). The backflow is coupled to membrane potential generation. Electron transfer between hemes d and b(558) is electrogenic. In contrast, electron transfer between hemes d and b(595) is not electrogenic, although heme b(595) is the major electron acceptor for heme d during the backflow, and therefore is not likely to be accompanied by net H(+) uptake or release. The E445A replacement does not alter electron distribution between hemes b(595) and d in the one-electron reduced cytochrome bd [E(m)(d) > E(m)(b(595)), where E(m) is the midpoint redox potential]; however, it precludes reduction of heme b(595), given heme d has been reduced already by the first electron. Presumably, E445 is one of the two redox-linked ionizable groups required for charge compensation of the di-heme oxygen-reducing site (b(595), d) upon its full reduction by two electrons.

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Year:  2005        PMID: 15728392      PMCID: PMC553295          DOI: 10.1073/pnas.0405683102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  Sequence analysis of cytochrome bd oxidase suggests a revised topology for subunit I.

Authors:  J P Osborne; R B Gennis
Journal:  Biochim Biophys Acta       Date:  1999-01-27

2.  The catalytic cycle of cytochrome c oxidase is not the sum of its two halves.

Authors:  Dmitry Bloch; Ilya Belevich; Audrius Jasaitis; Camilla Ribacka; Anne Puustinen; Michael I Verkhovsky; Mårten Wikström
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-29       Impact factor: 11.205

3.  The roles of the two proton input channels in cytochrome c oxidase from Rhodobacter sphaeroides probed by the effects of site-directed mutations on time-resolved electrogenic intraprotein proton transfer.

Authors:  A A Konstantinov; S Siletsky; D Mitchell; A Kaulen; R B Gennis
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-19       Impact factor: 11.205

4.  Purification and reconstitution of the cytochrome d terminal oxidase complex from Escherichia coli.

Authors:  M J Miller; R B Gennis
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

5.  Interactions between heme d and heme b595 in quinol oxidase bd from Escherichia coli: a photoselection study using femtosecond spectroscopy.

Authors:  Vitaliy B Borisov; Ursula Liebl; Fabrice Rappaport; Jean-Louis Martin; Jie Zhang; Robert B Gennis; Alexander A Konstantinov; Marten H Vos
Journal:  Biochemistry       Date:  2002-02-05       Impact factor: 3.162

6.  P(M) and P(R) forms of cytochrome c oxidase have different spectral properties.

Authors:  Olöf Einarsdóttir; Istvan Szundi; Ned Van Eps; Artur Sucheta
Journal:  J Inorg Biochem       Date:  2002-07-25       Impact factor: 4.155

7.  Magnetic circular dichroism used to examine the interaction of Escherichia coli cytochrome bd with ligands.

Authors:  V Borisov; A M Arutyunyan; J P Osborne; R B Gennis; A A Konstantinov
Journal:  Biochemistry       Date:  1999-01-12       Impact factor: 3.162

8.  The room temperature reaction of carbon monoxide and oxygen with the cytochrome bd quinol oxidase from Escherichia coli.

Authors:  B C Hill; J J Hill; R B Gennis
Journal:  Biochemistry       Date:  1994-12-20       Impact factor: 3.162

9.  The strict anaerobe Bacteroides fragilis grows in and benefits from nanomolar concentrations of oxygen.

Authors:  Anthony D Baughn; Michael H Malamy
Journal:  Nature       Date:  2004-01-29       Impact factor: 49.962

10.  The cytochrome d complex is a coupling site in the aerobic respiratory chain of Escherichia coli.

Authors:  M J Miller; R B Gennis
Journal:  J Biol Chem       Date:  1985-11-15       Impact factor: 5.157

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  22 in total

1.  Heme-heme and heme-ligand interactions in the di-heme oxygen-reducing site of cytochrome bd from Escherichia coli revealed by nanosecond absorption spectroscopy.

Authors:  Fabrice Rappaport; Jie Zhang; Marten H Vos; Robert B Gennis; Vitaliy B Borisov
Journal:  Biochim Biophys Acta       Date:  2010-05-28

Review 2.  The cytochrome bd respiratory oxygen reductases.

Authors:  Vitaliy B Borisov; Robert B Gennis; James Hemp; Michael I Verkhovsky
Journal:  Biochim Biophys Acta       Date:  2011-07-01

3.  Aerobic respiratory chain of Escherichia coli is not allowed to work in fully uncoupled mode.

Authors:  Vitaliy B Borisov; Ranjani Murali; Marina L Verkhovskaya; Dmitry A Bloch; Huazhi Han; Robert B Gennis; Michael I Verkhovsky
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

4.  Targeting the menaquinol binding loop of mycobacterial cytochrome bd oxidase.

Authors:  Amaravadhi Harikishore; Sherilyn Shi Min Chong; Priya Ragunathan; Roderick W Bates; Gerhard Grüber
Journal:  Mol Divers       Date:  2020-01-14       Impact factor: 2.943

5.  The fully oxidized form of the cytochrome bd quinol oxidase from E. coli does not participate in the catalytic cycle: direct evidence from rapid kinetics studies.

Authors:  Ke Yang; Vitaliy B Borisov; Alexander A Konstantinov; Robert B Gennis
Journal:  FEBS Lett       Date:  2008-09-26       Impact factor: 4.124

6.  Structure of a bd oxidase indicates similar mechanisms for membrane-integrated oxygen reductases.

Authors:  Schara Safarian; Chitra Rajendran; Hannelore Müller; Julia Preu; Julian D Langer; Sergey Ovchinnikov; Taichiro Hirose; Tomoichirou Kusumoto; Junshi Sakamoto; Hartmut Michel
Journal:  Science       Date:  2016-04-29       Impact factor: 47.728

7.  Functional importance of a pair of conserved glutamic acid residues and of Ca(2+) binding in the cbb(3)-type oxygen reductases from Rhodobacter sphaeroides and Vibrio cholerae.

Authors:  Hanlin Ouyang; Huazhi Han; Jung H Roh; James Hemp; Jonathan P Hosler; Robert B Gennis
Journal:  Biochemistry       Date:  2012-09-04       Impact factor: 3.162

8.  Respiration of Escherichia coli can be fully uncoupled via the nonelectrogenic terminal cytochrome bd-II oxidase.

Authors:  M Bekker; S de Vries; A Ter Beek; K J Hellingwerf; M J Teixeira de Mattos
Journal:  J Bacteriol       Date:  2009-06-19       Impact factor: 3.490

9.  Functional importance of Glutamate-445 and Glutamate-99 in proton-coupled electron transfer during oxygen reduction by cytochrome bd from Escherichia coli.

Authors:  Ranjani Murali; Robert B Gennis
Journal:  Biochim Biophys Acta Bioenerg       Date:  2018-04-30       Impact factor: 3.991

10.  An Engineered Glutamate in Biosynthetic Models of Heme-Copper Oxidases Drives Complete Product Selectivity by Tuning the Hydrogen-Bonding Network.

Authors:  Igor D Petrik; Roman Davydov; Maximilian Kahle; Braddock Sandoval; Sudharsan Dwaraknath; Pia Ädelroth; Brian Hoffman; Yi Lu
Journal:  Biochemistry       Date:  2021-01-19       Impact factor: 3.162

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