Literature DB >> 22913716

Functional importance of a pair of conserved glutamic acid residues and of Ca(2+) binding in the cbb(3)-type oxygen reductases from Rhodobacter sphaeroides and Vibrio cholerae.

Hanlin Ouyang1, Huazhi Han, Jung H Roh, James Hemp, Jonathan P Hosler, Robert B Gennis.   

Abstract

The cbb(3)-type cytochrome c oxidases are members of the family of heme-copper proton pumping respiratory oxygen reductases. The structure of the cbb(3)-type oxidase from Pseudomonas stutzeri reveals that, in addition to the six redox-active metal centers (two b-type hemes, three c-type hemes, and Cu(B)), the enzyme also contains at least one Ca(2+). The calcium bridges two propionate carboxyls at the interface between the low-spin heme b and the active-site heme b(3) and, in addition, is ligated to a serine in subunit CcoO and by a glutamate in subunit CcoN. The glutamate that is ligated to Ca(2+) is one of a pair of glutamic acid residues that has previously been suggested to be part of a proton exit pathway for pumped protons. In this work, mutations of these glutamates are investigated in the cbb(3)-type oxidases from Vibrio cholerae and Rhodobacter sphaeroides. Metal analysis shows that each of these wild-type enzymes contains Ca(2+). Mutations of the glutamate expected to ligate the Ca(2+) in each of these enzymes (E126 in V. cholerae and E180 in R. sphaeroides) result in a loss of activity as well as a loss of Ca(2+). Mutations of the nearby glutamate (E129 in V. cholerae and E183 in R. sphaeroides) also resulted in a loss of oxidase activity and a loss of Ca(2+). It is concluded that the Ca(2+) is essential for assembly of the fully functional enzyme and that neither of the glutamates is likely to be part of a pathway for pumped protons within the cbb(3)-type oxygen reductases. A more likely role for these glutamates is the maintenance of the structural integrity of the active conformation of the enzyme.

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Year:  2012        PMID: 22913716      PMCID: PMC3477607          DOI: 10.1021/bi3006847

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  Comparative genomics and site-directed mutagenesis support the existence of only one input channel for protons in the C-family (cbb3 oxidase) of heme-copper oxygen reductases.

Authors:  James Hemp; Huazhi Han; Jung Hyeob Roh; Samuel Kaplan; Todd J Martinez; Robert B Gennis
Journal:  Biochemistry       Date:  2007-08-04       Impact factor: 3.162

2.  The cbb3 oxidases are an ancient innovation of the domain bacteria.

Authors:  Anne-Lise Ducluzeau; Soufian Ouchane; Wolfgang Nitschke
Journal:  Mol Biol Evol       Date:  2008-03-18       Impact factor: 16.240

Review 3.  Diversity of the heme-copper superfamily in archaea: insights from genomics and structural modeling.

Authors:  James Hemp; Robert B Gennis
Journal:  Results Probl Cell Differ       Date:  2008

4.  Evolution of the haem copper oxidases superfamily: a rooting tale.

Authors:  Simonetta Gribaldo; Emmanuel Talla; Celine Brochier-Armanet
Journal:  Trends Biochem Sci       Date:  2009-07-31       Impact factor: 13.807

Review 5.  Looking for the minimum common denominator in haem-copper oxygen reductases: towards a unified catalytic mechanism.

Authors:  Manuela M Pereira; Filipa L Sousa; Andreia F Veríssimo; Miguel Teixeira
Journal:  Biochim Biophys Acta       Date:  2008-05-26

6.  The cytochrome ba3 oxygen reductase from Thermus thermophilus uses a single input channel for proton delivery to the active site and for proton pumping.

Authors:  Hsin-Yang Chang; James Hemp; Ying Chen; James A Fee; Robert B Gennis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-10       Impact factor: 11.205

7.  Generation of novel copper sites by mutation of the axial ligand of amicyanin. Atomic resolution structures and spectroscopic properties.

Authors:  Christopher J Carrell; John K Ma; William E Antholine; Jonathan P Hosler; F Scott Mathews; Victor L Davidson
Journal:  Biochemistry       Date:  2007-02-20       Impact factor: 3.162

8.  Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.

Authors:  Christopher M Jones; Blaz Stres; Magnus Rosenquist; Sara Hallin
Journal:  Mol Biol Evol       Date:  2008-07-08       Impact factor: 16.240

Review 9.  Was nitric oxide the first deep electron sink?

Authors:  Anne-Lise Ducluzeau; Robert van Lis; Simon Duval; Barbara Schoepp-Cothenet; Michael J Russell; Wolfgang Nitschke
Journal:  Trends Biochem Sci       Date:  2008-11-12       Impact factor: 13.807

10.  A new assay for nitric oxide reductase reveals two conserved glutamate residues form the entrance to a proton-conducting channel in the bacterial enzyme.

Authors:  Faye H Thorndycroft; Gareth Butland; David J Richardson; Nicholas J Watmough
Journal:  Biochem J       Date:  2007-01-01       Impact factor: 3.857

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  4 in total

1.  Conformational coupling between the active site and residues within the K(C)-channel of the Vibrio cholerae cbb3-type (C-family) oxygen reductase.

Authors:  Young O Ahn; Paween Mahinthichaichan; Hyun Ju Lee; Hanlin Ouyang; Daniel Kaluka; Syun-Ru Yeh; Davinia Arjona; Denis L Rousseau; Emad Tajkhorshid; Pia Adelroth; Robert B Gennis
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

2.  Characterization of the nitric oxide reductase from Thermus thermophilus.

Authors:  Lici A Schurig-Briccio; Padmaja Venkatakrishnan; James Hemp; Carlos Bricio; José Berenguer; Robert B Gennis
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

3.  Direct regulation of cytochrome c oxidase by calcium ions.

Authors:  Tatiana Vygodina; Anna Kirichenko; Alexander A Konstantinov
Journal:  PLoS One       Date:  2013-09-10       Impact factor: 3.240

4.  Structure of the alternative complex III in a supercomplex with cytochrome oxidase.

Authors:  Chang Sun; Samir Benlekbir; Padmaja Venkatakrishnan; Yuhang Wang; Sangjin Hong; Jonathan Hosler; Emad Tajkhorshid; John L Rubinstein; Robert B Gennis
Journal:  Nature       Date:  2018-04-25       Impact factor: 49.962

  4 in total

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