Literature DB >> 15726609

Hydrophobic tendency of polar group hydration as a major force in type I antifreeze protein recognition.

Cheng Yang1, Kim A Sharp.   

Abstract

The random network model of water quantitatively describes the different hydration heat capacities of polar and apolar solutes in terms of distortions of the water-water hydrogen bonding angle in the first hydration shell (Gallagher and Sharp, JACS 2003;125:9853). The distribution of this angle in pure water is bimodal, with a low-angle population and high-angle population. Polar solutes increase the high-angle population while apolar solutes increase the low-angle population. The ratio of the two populations quantifies the hydrophobicity of the solute and provides a sensitive measure of water structural distortions. This method of analysis is applied to study hydration of type I thermal hysteresis protein (THP) from winter flounder and three quadruple mutants of four threonine residues at positions 2, 13, 24, and 35. Wild-type and two mutants (VVVV and AAAA) have antifreeze (thermal hysteresis) activity, while the other mutant (SSSS) has no activity. The analysis reveals significant differences in the hydration structure of the ice-binding site. For the SSSS mutant, polar groups have a typical polar-like hydration, that is, more high-angle H-bonds than bulk water. For the wild-type and active mutants, polar groups have unusual, very apolar-like hydration, that is, more low-angle H-bonds than bulk water. This pattern of hydration was seen previously in the structurally distinct type III THPs (Yang & Sharp Biophys Chem 2004;109:137), suggesting for the first time a general mechanism for different THP classes. The specific shape, residue size, and clustering of both polar and apoler groups are essential for an active ice binding surface.

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Year:  2005        PMID: 15726609     DOI: 10.1002/prot.20429

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  11 in total

1.  Structural Basis for the Inhibition of Gas Hydrates by α-Helical Antifreeze Proteins.

Authors:  Tianjun Sun; Peter L Davies; Virginia K Walker
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

Review 2.  Protein-solvent interactions.

Authors:  Ninad Prabhu; Kim Sharp
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

3.  Antifreeze proteins at the ice/water interface: three calculated discriminating properties for orientation of type I proteins.

Authors:  Andrzej Wierzbicki; Pranav Dalal; Thomas E Cheatham; Jared E Knickelbein; A D J Haymet; Jeffry D Madura
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

4.  Anchored clathrate waters bind antifreeze proteins to ice.

Authors:  Christopher P Garnham; Robert L Campbell; Peter L Davies
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

5.  Antifreeze protein hydration waters: Unstructured unless bound to ice.

Authors:  Sean M Marks; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-06       Impact factor: 11.205

6.  Water in the half shell: structure of water, focusing on angular structure and solvation.

Authors:  Kim A Sharp; Jane M Vanderkooi
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

7.  Re-evaluation of a bacterial antifreeze protein as an adhesin with ice-binding activity.

Authors:  Shuaiqi Guo; Christopher P Garnham; John C Whitney; Laurie A Graham; Peter L Davies
Journal:  PLoS One       Date:  2012-11-07       Impact factor: 3.240

8.  NMR characterizations of the ice binding surface of an antifreeze protein.

Authors:  Jiang Hong; Yunfei Hu; Congmin Li; Zongchao Jia; Bin Xia; Changwen Jin
Journal:  PLoS One       Date:  2010-12-28       Impact factor: 3.240

9.  Characterization of the Local Structure in Liquid Water by Various Order Parameters.

Authors:  Elise Duboué-Dijon; Damien Laage
Journal:  J Phys Chem B       Date:  2015-06-19       Impact factor: 2.991

10.  Investigation of changes in structure and thermodynamic of spruce budworm antifreeze protein under subfreezing temperature.

Authors:  Hung Nguyen; Ly Le
Journal:  Sci Rep       Date:  2017-01-20       Impact factor: 4.379

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