Literature DB >> 16683747

Protein-solvent interactions.

Ninad Prabhu1, Kim Sharp.   

Abstract

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Year:  2006        PMID： 16683747      PMCID： PMC2584800          DOI： 10.1021/cr040437f

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  86 in total

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Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

2.  On the calculation of absolute macromolecular binding free energies.

Authors:  Hengbin Luo; Kim Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

3.  Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model.

Authors:  Anthony K Felts; Yuichi Harano; Emilio Gallicchio; Ronald M Levy
Journal:  Proteins       Date:  2004-08-01

4.  Antifreeze protein-induced morphological modification mechanisms linked to ice binding surface.

Authors:  Christina S Strom; Xiang Yang Liu; Zongchao Jia
Journal:  J Biol Chem       Date:  2004-05-12       Impact factor: 5.157

5.  The mechanism of the type III antifreeze protein action: a computational study.

Authors:  Cheng Yang; Kim A Sharp
Journal:  Biophys Chem       Date:  2004-04-01       Impact factor: 2.352

6.  Ice-binding mechanism of winter flounder antifreeze proteins.

Authors:  A Cheng; K M Merz
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

7.  Membrane binding of peptides containing both basic and aromatic residues. Experimental studies with peptides corresponding to the scaffolding region of caveolin and the effector region of MARCKS.

Authors:  A Arbuzova; L Wang; J Wang; G Hangyás-Mihályné; D Murray; B Honig; S McLaughlin
Journal:  Biochemistry       Date:  2000-08-22       Impact factor: 3.162

8.  The hydration of amides in helices; a comprehensive picture from molecular dynamics, IR, and NMR.

Authors:  Scott T R Walsh; Richard P Cheng; Wayne W Wright; Darwin O V Alonso; Valerie Daggett; Jane M Vanderkooi; William F DeGrado
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

9.  Theoretical conformational analysis for neurotransmitters in the gas phase and in aqueous solution. Norepinephrine.

Authors:  Peter I Nagy; Giuliano Alagona; Caterina Ghio; Krisztina Takács-Novák
Journal:  J Am Chem Soc       Date:  2003-03-05       Impact factor: 15.419

10.  Salt effects on protein-DNA interactions. The lambda cI repressor and EcoRI endonuclease.

Authors:  V K Misra; J L Hecht; K A Sharp; R A Friedman; B Honig
Journal:  J Mol Biol       Date:  1994-04-29       Impact factor: 5.469
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  29 in total

1.  Conserved water molecules stabilize the Omega-loop in class A beta-lactamases.

Authors:  Fabian Bös; Jürgen Pleiss
Journal:  Antimicrob Agents Chemother       Date:  2008-01-14       Impact factor: 5.191

2.  Electro-optical properties characterization of fish type III antifreeze protein.

Authors:  Andrés G Salvay; Javier Santos; Eduardo I Howard
Journal:  J Biol Phys       Date:  2008-06-03       Impact factor: 1.365

3.  Multiple molecular dynamics simulations of TEM beta-lactamase: dynamics and water binding of the omega-loop.

Authors:  Fabian Bös; Jürgen Pleiss
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

4.  Changes in protein structure and dynamics as a function of hydration from (1)H second moments.

Authors:  Galina Diakova; Yanina A Goddard; Jean-Pierre Korb; Robert G Bryant
Journal:  J Magn Reson       Date:  2007-09-15       Impact factor: 2.229

5.  Note: On the universality of proximal radial distribution functions of proteins.

Authors:  Bin Lin; B Montgomery Pettitt
Journal:  J Chem Phys       Date:  2011-03-14       Impact factor: 3.488

6.  Observation of ice-like water layers at an aqueous protein surface.

Authors:  Konrad Meister; Simona Strazdaite; Arthur L DeVries; Stephan Lotze; Luuk L C Olijve; Ilja K Voets; Huib J Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-02       Impact factor: 11.205

7.  Antifreeze protein hydration waters: Unstructured unless bound to ice.

Authors:  Sean M Marks; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-06       Impact factor: 11.205

8.  "Solvent hydrogen-bond occlusion": A new model of polar desolvation for biomolecular energetics.

Authors:  Andrea Bazzoli; John Karanicolas
Journal:  J Comput Chem       Date:  2017-03-20       Impact factor: 3.376

Review 9.  Biomolecular electrostatics and solvation: a computational perspective.

Authors:  Pengyu Ren; Jaehun Chun; Dennis G Thomas; Michael J Schnieders; Marcelo Marucho; Jiajing Zhang; Nathan A Baker
Journal:  Q Rev Biophys       Date:  2012-11       Impact factor: 5.318

10.  Stochastic level-set variational implicit-solvent approach to solute-solvent interfacial fluctuations.

Authors:  Shenggao Zhou; Hui Sun; Li-Tien Cheng; Joachim Dzubiella; Bo Li; J Andrew McCammon
Journal:  J Chem Phys       Date:  2016-08-07       Impact factor: 3.488
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