Literature DB >> 15718128

Protein complexes: structure prediction challenges for the 21st century.

Patrick Aloy1, Matthieu Pichaud, Robert B Russell.   

Abstract

Only a tiny fraction of the many hundreds of known protein complexes are also of known three-dimensional structure. The experimental difficulties surrounding structure determination of complexes make methods that are able to predict structures paramount. The challenge of predicting complex structures is daunting and raises many issues that need to be addressed. To produce the best models, new prediction methods have to somehow combine partial structures with a mixed bag of experimental data, including interactions and low-resolution electron microscopy images.

Mesh:

Substances:

Year:  2005        PMID: 15718128     DOI: 10.1016/j.sbi.2005.01.012

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  31 in total

1.  M-TASSER: an algorithm for protein quaternary structure prediction.

Authors:  Huiling Chen; Jeffrey Skolnick
Journal:  Biophys J       Date:  2007-09-28       Impact factor: 4.033

2.  Optimization of electrostatic interactions in protein-protein complexes.

Authors:  Kelly Brock; Kemper Talley; Kacey Coley; Petras Kundrotas; Emil Alexov
Journal:  Biophys J       Date:  2007-08-10       Impact factor: 4.033

3.  Protein structure homology modeling using SWISS-MODEL workspace.

Authors:  Lorenza Bordoli; Florian Kiefer; Konstantin Arnold; Pascal Benkert; James Battey; Torsten Schwede
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

4.  Protein models docking benchmark 2.

Authors:  Ivan Anishchenko; Petras J Kundrotas; Alexander V Tuzikov; Ilya A Vakser
Journal:  Proteins       Date:  2015-03-25

5.  Structural templates for comparative protein docking.

Authors:  Ivan Anishchenko; Petras J Kundrotas; Alexander V Tuzikov; Ilya A Vakser
Journal:  Proteins       Date:  2015-06-13

6.  Human cancer protein-protein interaction network: a structural perspective.

Authors:  Gozde Kar; Attila Gursoy; Ozlem Keskin
Journal:  PLoS Comput Biol       Date:  2009-12-11       Impact factor: 4.475

7.  Challenges in Biomarker Discovery: Combining Expert Insights with Statistical Analysis of Complex Omics Data.

Authors:  Jason E McDermott; Jing Wang; Hugh Mitchell; Bobbie-Jo Webb-Robertson; Ryan Hafen; John Ramey; Karin D Rodland
Journal:  Expert Opin Med Diagn       Date:  2013-01

8.  (PS)2-v2: template-based protein structure prediction server.

Authors:  Chih-Chieh Chen; Jenn-Kang Hwang; Jinn-Moon Yang
Journal:  BMC Bioinformatics       Date:  2009-10-31       Impact factor: 3.169

9.  GWIDD: Genome-wide protein docking database.

Authors:  Petras J Kundrotas; Zhengwei Zhu; Ilya A Vakser
Journal:  Nucleic Acids Res       Date:  2009-11-09       Impact factor: 16.971

10.  Towards inferring time dimensionality in protein-protein interaction networks by integrating structures: the p53 example.

Authors:  Nurcan Tuncbag; Gozde Kar; Attila Gursoy; Ozlem Keskin; Ruth Nussinov
Journal:  Mol Biosyst       Date:  2009-12
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.