Literature DB >> 15704965

The impact of pyrrolidine hydroxylation on the conformation of proline-containing peptides.

Carol M Taylor1, Renaud Hardré, Patrick J B Edwards.   

Abstract

[structure: see text] A series of eight dipeptides of the general formula Ac-Phe-Pro-NHMe was synthesized and the thermodynamics of the cis --> trans isomerization about the central amide bond were studied by NMR. Pro* represents the following prolines: l-proline (Pro), l-trans-4-hydroxyproline (Hyp), l-cis-4-hydroxyproline (hyp), l-cis-4-methoxyproline (hyp[OMe]), l-trans-3-hydroxyproline (3-Hyp), l-cis-3-hydroxyproline (3-hyp), l-2,3-trans-3,4-cis-3,4-dihydroxyproline (DHP), and l-2,3-cis-3,4-trans-3,4-dihydroxyproline (dhp). The conformation of the pyrrolidine ring in each case is discussed in light of previous structural studies, analysis of potential stereoelectronic effects, and NMR data. Hydroxy substituents at C-4 have a greater impact on cis --> trans isomerization than analogous substituents at C-3 as a result of the intervening bond distances and bridging groups. The position of the equilibrium and its dependence on temperature are a reflection of both enthalpic and entropic factors, the latter being complicated in this study by an Ar-Pro interaction in the cis conformation. The substituents on the pyrrolidine ring determine the conformation of the five-membered ring, which in turn influences the strength of the Ar-Pro interaction, backbone dihedral angles, and the relative energy of the cis and trans species. The ultimate position of the equilibrium depends on a complex blend of steric, electronic, and conformational factors.

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Year:  2005        PMID: 15704965     DOI: 10.1021/jo0490043

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  9 in total

1.  Stereoelectronic effects on polyproline conformation.

Authors:  Jia-Cherng Horng; Ronald T Raines
Journal:  Protein Sci       Date:  2006-01       Impact factor: 6.725

2.  Synthesis of 5-fluoro- and 5-hydroxymethanoprolines via lithiation of N-BOC-methanopyrrolidines. Constrained Cγ-exo and Cγ-endo Flp and Hyp conformer mimics.

Authors:  Grant R Krow; Matthew D Shoulders; Ramakrishna Edupuganti; Deepa Gandla; Fang Yu; Philip E Sonnet; Matthew Sender; Amit Choudhary; Charles DeBrosse; Charles W Ross; Patrick Carroll; Ronald T Raines
Journal:  J Org Chem       Date:  2012-05-25       Impact factor: 4.354

3.  Requirements for Skp1 processing by cytosolic prolyl 4(trans)-hydroxylase and α-N-acetylglucosaminyltransferase enzymes involved in O₂ signaling in dictyostelium.

Authors:  Hanke van der Wel; Jennifer M Johnson; Yuechi Xu; Chamini V Karunaratne; Kyle D Wilson; Yusuf Vohra; Geert-Jan Boons; Carol M Taylor; Brad Bendiak; Christopher M West
Journal:  Biochemistry       Date:  2011-02-09       Impact factor: 3.162

Review 4.  Chiral secondary amino acids, their importance, and methods of analysis.

Authors:  Helena Zahradníčková; Stanislav Opekar; Lucie Řimnáčová; Petr Šimek; Martin Moos
Journal:  Amino Acids       Date:  2022-02-21       Impact factor: 3.520

5.  Protected aminooxyprolines for expedited library synthesis: application to Tsg101-directed proline-oxime containing peptides.

Authors:  Fa Liu; Andrew G Stephen; Robert J Fisher; Terrence R Burke
Journal:  Bioorg Med Chem Lett       Date:  2007-12-07       Impact factor: 2.823

6.  Lysine acetylation controls local protein conformation by influencing proline isomerization.

Authors:  Françoise S Howe; Ivan Boubriak; Matthew J Sale; Anitha Nair; David Clynes; Anne Grijzenhout; Struan C Murray; Ronja Woloszczuk; Jane Mellor
Journal:  Mol Cell       Date:  2014-08-07       Impact factor: 17.970

7.  Conformational changes associated with post-translational modifications of Pro(143) in Skp1 of Dictyostelium--a dipeptide model system.

Authors:  Chamini V Karunaratne; Thomas K Weldeghiorghis; Christopher M West; Carol M Taylor
Journal:  J Am Chem Soc       Date:  2014-10-16       Impact factor: 15.419

8.  3-Fluoro-4-hydroxyprolines: Synthesis, Conformational Analysis, and Stereoselective Recognition by the VHL E3 Ubiquitin Ligase for Targeted Protein Degradation.

Authors:  Andrea Testa; Xavier Lucas; Guilherme V Castro; Kwok-Ho Chan; Jane E Wright; Andrew C Runcie; Morgan S Gadd; William T A Harrison; Eun-Jung Ko; Daniel Fletcher; Alessio Ciulli
Journal:  J Am Chem Soc       Date:  2018-07-12       Impact factor: 15.419

9.  n→π* interactions of amides and thioamides: implications for protein stability.

Authors:  Robert W Newberry; Brett VanVeller; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2013-05-20       Impact factor: 15.419

  9 in total

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