Literature DB >> 15698326

Icosahedral packing of RNA viral genomes.

Joseph Rudnick1, Robijn Bruinsma.   

Abstract

Many spherelike RNA viruses package a portion of their genome in a manner that mirrors the icosahedral symmetry of the protein container, or capsid. Graph-theoretical constraints forbid exact realization of icosahedral symmetry. This paper explores the consequences of graph-theoretical constraints on quasi-icosahedral genome structures. A key result is the prediction that the genome organization is a Hamiltonian path or cycle and that the associated assembly scenario of such single-stranded spherelike RNA viruses resembles that of cylindrical RNA viruses, such as tobacco mosaic viruses.

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Year:  2005        PMID: 15698326     DOI: 10.1103/PhysRevLett.94.038101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  17 in total

1.  Mechanisms of capsid assembly around a polymer.

Authors:  Aleksandr Kivenson; Michael F Hagan
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

2.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

Review 3.  Physics of RNA and viral assembly.

Authors:  R F Bruinsma
Journal:  Eur Phys J E Soft Matter       Date:  2006-03-23       Impact factor: 1.890

4.  Controlling viral capsid assembly with templating.

Authors:  Michael F Hagan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-05-08

5.  A theory for viral capsid assembly around electrostatic cores.

Authors:  Michael F Hagan
Journal:  J Chem Phys       Date:  2009-03-21       Impact factor: 3.488

6.  Evidence that viral RNAs have evolved for efficient, two-stage packaging.

Authors:  Alexander Borodavka; Roman Tuma; Peter G Stockley
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-10       Impact factor: 11.205

7.  Structural transitions of encapsidated polyelectrolytes.

Authors:  D G Angelescu; P Linse; T T Nguyen; R F Bruinsma
Journal:  Eur Phys J E Soft Matter       Date:  2008-04-03       Impact factor: 1.890

8.  Encapsulation of a polymer by an icosahedral virus.

Authors:  Oren M Elrad; Michael F Hagan
Journal:  Phys Biol       Date:  2010-12-09       Impact factor: 2.583

9.  Encapsidated hepatitis B virus reverse transcriptase is poised on an ordered RNA lattice.

Authors:  Joseph Che-Yen Wang; David G Nickens; Thomas B Lentz; Daniel D Loeb; Adam Zlotnick
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-17       Impact factor: 11.205

10.  Heparin binding induces conformational changes in Adeno-associated virus serotype 2.

Authors:  Hazel C Levy; Valorie D Bowman; Lakshmanan Govindasamy; Robert McKenna; Kevin Nash; Kenneth Warrington; Weijun Chen; Nicholas Muzyczka; Xiaodong Yan; Timothy S Baker; Mavis Agbandje-McKenna
Journal:  J Struct Biol       Date:  2008-12-13       Impact factor: 2.867

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