Literature DB >> 16554977

Physics of RNA and viral assembly.

R F Bruinsma1.   

Abstract

The overview discusses the application of physical arguments to structure and function of single-stranded viral RNA genomes.

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Year:  2006        PMID： 16554977     DOI： 10.1140/epje/i2005-10071-1

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN： 1292-8941            Impact factor:   1.890


  23 in total

Review 1.  Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.

Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

3.  Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces.

Authors:  D C Rau; V A Parsegian
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

4.  Imaging RNA and dynamic protein segments with low-resolution virus crystallography: experimental design, data processing and implications of electron density maps.

Authors:  H Tsuruta; V S Reddy; W R Wikoff; J E Johnson
Journal:  J Mol Biol       Date:  1998-12-18       Impact factor: 5.469

5.  Independent assembly of Qbeta and MS2 phages in doubly infected Escherichia coli.

Authors:  C M Ling; P P Hung; L R Overby
Journal:  Virology       Date:  1970-04       Impact factor: 3.616

6.  Self-assembly of Q-beta and MS2 phage particles: possible function of initiation complexes.

Authors:  P P Hung; C M Ling; L R Overby
Journal:  Science       Date:  1969-12-26       Impact factor: 47.728

7.  Small-angle X-ray and light scattering studies on the influence of Mg2+ ions on the structure of the RNA from bacteriophage MS2.

Authors:  G Ribitsch; R De Clercq; W Folkhard; P Zipper; J Schurz; J Clauwaert
Journal:  Z Naturforsch C Biosci       Date:  1985 Mar-Apr

8.  Regulating self-assembly of spherical oligomers.

Authors:  Jennifer M Johnson; Jinghua Tang; Yaw Nyame; Deborah Willits; Mark J Young; Adam Zlotnick
Journal:  Nano Lett       Date:  2005-04       Impact factor: 11.189

9.  NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA.

Authors:  M H Kolk; M van der Graaf; S S Wijmenga; C W Pleij; H A Heus; C W Hilbers
Journal:  Science       Date:  1998-04-17       Impact factor: 47.728

10.  Heterologous RNA encapsidated in Pariacoto virus-like particles forms a dodecahedral cage similar to genomic RNA in wild-type virions.

Authors:  Karyn N Johnson; Liang Tang; John E Johnson; L Andrew Ball
Journal:  J Virol       Date:  2004-10       Impact factor: 5.103
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  11 in total

1.  Langevin dynamics simulation of polymer-assisted virus-like assembly.

Authors:  J P Mahalik; M Muthukumar
Journal:  J Chem Phys       Date:  2012-04-07       Impact factor: 3.488

2.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

3.  Evidence that viral RNAs have evolved for efficient, two-stage packaging.

Authors:  Alexander Borodavka; Roman Tuma; Peter G Stockley
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-10       Impact factor: 11.205

4.  Density functional theory for encapsidated polyelectrolytes: a comparison with Monte Carlo simulation.

Authors:  Zhehui Jin; Jianzhong Wu
Journal:  J Chem Phys       Date:  2012-07-28       Impact factor: 3.488

5.  IRAM: virus capsid database and analysis resource.

Authors:  Iman Almansour; Mazen Alhagri; Rahaf Alfares; Manal Alshehri; Razan Bakhashwain; Ahmed Maarouf
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

6.  In vitro functional analysis of gRNA sites regulating assembly of hepatitis B virus.

Authors:  Nikesh Patel; Sam Clark; Eva U Weiß; Carlos P Mata; Jen Bohon; Erik R Farquhar; Daniel P Maskell; Neil A Ranson; Reidun Twarock; Peter G Stockley
Journal:  Commun Biol       Date:  2021-12-16

7.  Why large icosahedral viruses need scaffolding proteins.

Authors:  Siyu Li; Polly Roy; Alex Travesset; Roya Zandi
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-09       Impact factor: 11.205

8.  Revealing the density of encoded functions in a viral RNA.

Authors:  Nikesh Patel; Eric C Dykeman; Robert H A Coutts; George P Lomonossoff; David J Rowlands; Simon E V Phillips; Neil Ranson; Reidun Twarock; Roman Tuma; Peter G Stockley
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

9.  Bacteriophage MS2 genomic RNA encodes an assembly instruction manual for its capsid.

Authors:  Peter G Stockley; Simon J White; Eric Dykeman; Iain Manfield; Ottar Rolfsson; Nikesh Patel; Richard Bingham; Amy Barker; Emma Wroblewski; Rebecca Chandler-Bostock; Eva U Weiß; Neil A Ranson; Roman Tuma; Reidun Twarock
Journal:  Bacteriophage       Date:  2016-03-02

10.  Direct Evidence for Packaging Signal-Mediated Assembly of Bacteriophage MS2.

Authors:  Óttar Rolfsson; Stefani Middleton; Iain W Manfield; Simon J White; Baochang Fan; Robert Vaughan; Neil A Ranson; Eric Dykeman; Reidun Twarock; James Ford; C Cheng Kao; Peter G Stockley
Journal:  J Mol Biol       Date:  2015-12-01       Impact factor: 5.469
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