Literature DB >> 10683746

Detection of plant genes using a rapid, nonorganic DNA purification method.

J J Lin1, R Fleming, J Kuo, B F Matthews, J A Saunders.   

Abstract

We have developed a simple procedure for the preparation of plant genomic DNA using FTA paper. Plant leaves were crushed against FTA paper, and the genomic DNA was purified using simple, nonorganic reagents. The 18S rRNA gene and the gene encoding the ribulose-1, 5-bisphosphate carboxylase/oxygenase large subunit (rbcL) from the chloroplast genome were detected by PCR amplification of DNA on FTA paper. DNA amplification was successful using extracts from 16 dicot and monocot plants. Studies of specific plant extracts revealed that extracts of leaf samples could be collected and stored at room temperature on FTA paper without a decrease in the DNA amplification success rate for more than a month. Both the 18S RNA gene and the rbcL gene were detected in the genomic DNA isolated from various soybean cultivars stored in this manner. Furthermore, by modestly increasing the number of cycles of DNA amplification, we were able to detect the uidA gene in transgenic tobacco and rice leaves as well as a single copy gene linked to the resistance gene of cyst nematode race 3 using genomic DNA isolated on FTA paper. These results demonstrate that genomic DNA isolated using FTA paper can be used for the detection of plant genes, from a wide range of plants with either high or low gene copy number and of either nuclear or cytoplasmic origin.

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Year:  2000        PMID: 10683746     DOI: 10.2144/00282pf01

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  7 in total

1.  Large-scale general collection of wild-plant DNA in Mustang, Nepal.

Authors:  Hirokazu Tsukaya; Yu Iokawa; Makiko Kondo; Hideaki Ohba
Journal:  J Plant Res       Date:  2005-02-03       Impact factor: 2.629

2.  Improved template preparation for PCR-based assays for detection of food-borne bacterial pathogens.

Authors:  K A Lampel; P A Orlandi; L Kornegay
Journal:  Appl Environ Microbiol       Date:  2000-10       Impact factor: 4.792

3.  Development of the species-specific multiplex PCR and DNA sequencing methods for rapid authentication of Isatidis Folium and its adulterants.

Authors:  Yung-Chuan Hsieh; Ming-Sian Wu; Hui-Chun Lee; Chia-Yun Hsieh; Shih-Shan Huang; Chia-Fen Tsai; Ya-Tze Lin; Mei-Chih Lin; Su-Hsiang Tseng; Der-Yuan Wang
Journal:  J Food Drug Anal       Date:  2021-06-15       Impact factor: 6.157

4.  Ice-cap. A high-throughput method for capturing plant tissue samples for genotype analysis.

Authors:  Patrick Krysan
Journal:  Plant Physiol       Date:  2004-07       Impact factor: 8.340

5.  The best practice for preparation of samples from FTA®cards for diagnosis of blood borne infections using African trypanosomes as a model system.

Authors:  Heba A Ahmed; Ewan T MacLeod; Geoff Hide; Susan C Welburn; Kim Picozzi
Journal:  Parasit Vectors       Date:  2011-05-07       Impact factor: 3.876

6.  Collecting, archiving and processing DNA from wildlife samples using FTA databasing paper.

Authors:  L M Smith; L A Burgoyne
Journal:  BMC Ecol       Date:  2004-04-08       Impact factor: 2.964

7.  Validation of endogenous reference genes in Buglossoides arvensis for normalizing RT-qPCR-based gene expression data.

Authors:  Vijay J Gadkar; Martin Filion
Journal:  Springerplus       Date:  2015-04-15
  7 in total

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