Literature DB >> 15681649

Light-induced relaxation of photolyzed carbonmonoxy myoglobin: a temperature-dependent x-ray absorption near-edge structure (XANES) study.

A Arcovito1, D C Lamb, G U Nienhaus, J L Hazemann, M Benfatto, S Della Longa.   

Abstract

X-ray absorption near-edge structure (XANES) spectra at the Fe K-edge have been measured and compared on solution samples of horse carbonmonoxy-myoglobin and its photoproducts, prepared by two different photolysis protocols: 1), extended illumination at low temperature (15 K) by white light; and 2), slow-cool from 140 to 10 K at a rate of 0.5 K/min while illuminating the sample with a 532-nm continuous-wave laser source. CO recombination has been followed while increasing the temperature at a rate of 1.2 K/min. After extended illumination at 15 K, a single process is observed, corresponding to CO recombination from a completely photolyzed species with CO bound to the primary docking site (formally B-state, in agreement with previous x-ray diffraction studies). The temperature peak for this single process is approximately 50 K. Using slow-cool illumination, data show a two-state recombination curve, the two temperature peaks being roughly assigned to 50 K and 110 K. These results are in good agreement with previous FTIR studies using temperature-derivative spectroscopy. The XANES spectroscopic markers probe structural differences between the photoproduct induced by extended illumination at 15 K and the photoproduct induced by slow-cool illumination. These differences in the XANES data have been interpreted as due to light-induced Fe-heme relaxation that does not involve CO migration from the B-state. A quantitative description of the unrelaxed and relaxed B-states, including the measurements of the Fe-N(p), Fe-N(His), and Fe-CO distances, and the out-of-plane Fe displacement, has been obtained via a procedure (MXAN) recently developed by us. This work shows that XANES, being able to extract both kinetic and structural parameters in a single experiment, is a powerful tool for structural dynamic studies of proteins.

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Year:  2005        PMID: 15681649      PMCID: PMC1305389          DOI: 10.1529/biophysj.104.054973

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

2.  The effect of ligand dynamics on heme electronic transition band III in myoglobin.

Authors:  Karin Nienhaus; Don C Lamb; Pengchi Deng; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Geometrical fitting of experimental XANES spectra by a full multiple-scattering procedure.

Authors:  M Benfatto; S Della Longa
Journal:  J Synchrotron Radiat       Date:  2001-07-01       Impact factor: 2.616

4.  X-ray absorption spectroscopy: state-of-the-art analysis.

Authors:  C R Natoli; M Benfatto; S Della Longa; K Hatada
Journal:  J Synchrotron Radiat       Date:  2002-12-24       Impact factor: 2.616

5.  Ligand binding and protein relaxation in heme proteins: a room temperature analysis of NO geminate recombination.

Authors:  J W Petrich; J C Lambry; K Kuczera; M Karplus; C Poyart; J L Martin
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

6.  Structural heterogeneity and ligand binding in carbonmonoxy myoglobin crystals at cryogenic temperatures.

Authors:  G U Nienhaus; K Chu; K Jesse
Journal:  Biochemistry       Date:  1998-05-12       Impact factor: 3.162

7.  Ligand migration in sperm whale myoglobin.

Authors:  E E Scott; Q H Gibson
Journal:  Biochemistry       Date:  1997-09-30       Impact factor: 3.162

8.  O2 and CO reactions with heme proteins: quantum yields and geminate recombination on picosecond time scales.

Authors:  M R Chance; S H Courtney; M D Chavez; M R Ondrias; J M Friedman
Journal:  Biochemistry       Date:  1990-06-12       Impact factor: 3.162

9.  Mapping the pathways for O2 entry into and exit from myoglobin.

Authors:  E E Scott; Q H Gibson; J S Olson
Journal:  J Biol Chem       Date:  2000-10-03       Impact factor: 5.157

10.  Redox-induced structural dynamics of Fe-heme ligand in myoglobin by X-ray absorption spectroscopy.

Authors:  S Della Longa; A Arcovito; M Benfatto; A Congiu-Castellano; M Girasole; J L Hazemann; A Lo Bosco
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

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  4 in total

1.  X-ray structure analysis of a metalloprotein with enhanced active-site resolution using in situ x-ray absorption near edge structure spectroscopy.

Authors:  Alessandro Arcovito; Maurizio Benfatto; Michele Cianci; S Samar Hasnain; Karin Nienhaus; G Ulrich Nienhaus; Carmelinda Savino; Richard W Strange; Beatrice Vallone; Stefano Della Longa
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

2.  Interplays of electron and nuclear motions along CO dissociation trajectory in myoglobin revealed by ultrafast X-rays and quantum dynamics calculations.

Authors:  Megan L Shelby; Andrew Wildman; Dugan Hayes; Michael W Mara; Patrick J Lestrange; Marco Cammarata; Lodovico Balducci; Maxim Artamonov; Henrik T Lemke; Diling Zhu; Tamar Seideman; Brian M Hoffman; Xiaosong Li; Lin X Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-06       Impact factor: 12.779

3.  Ligand pathways in neuroglobin revealed by low-temperature photodissociation and docking experiments.

Authors:  Chiara Ardiccioni; Alessandro Arcovito; Stefano Della Longa; Peter van der Linden; Dominique Bourgeois; Martin Weik; Linda Celeste Montemiglio; Carmelinda Savino; Giovanna Avella; Cécile Exertier; Philippe Carpentier; Thierry Prangé; Maurizio Brunori; Nathalie Colloc'h; Beatrice Vallone
Journal:  IUCrJ       Date:  2019-07-10       Impact factor: 4.769

4.  Observing heme doming in myoglobin with femtosecond X-ray absorption spectroscopy.

Authors:  M Levantino; H T Lemke; G Schirò; M Glownia; A Cupane; M Cammarata
Journal:  Struct Dyn       Date:  2015-05-29       Impact factor: 2.920

  4 in total

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